Communities
Detected clusters. leiden:papers and leiden:concepts come from the in-house hybrid Leiden detector (cosine over Nomic vectors, edge weights boosted by typed relations + citations). Labels are Sonnet-generated. graphify rows are the legacy import from the pre-Supabase era. Each community is a first-class entity with members_of relations per node.
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Community | Members | Method | Source |
|---|---|---|---|
Mechanistic interpretability & model evaluation Spans attention head decomposition, benchmark awareness, and genomic pathogenicity prediction via neural models. | 197 | leiden:concepts | — |
Design principles for care-centered systems Cross-scale frameworks linking spatial patterns, diagrams, and simplicity as expressions of care in design. | 184 | leiden:concepts | — |
Bioelectric morphogenesis & anatomical intelligence Levin-led research showing bioelectric signals encode and control anatomical goal states in living systems. | 127 | leiden:concepts | — |
Causal emergence in biological systems Examines how macro-scale causal power exceeds micro-scale in living and learning systems. | 118 | leiden:concepts | — |
Collective intelligence & distributed cognition All minds are composites of parts; individual and collective intelligence unified under substrate-neutral principles. | 111 | leiden:concepts | — |
Alexander's centers as cross-domain framework Mapping Christopher Alexander's 15 properties and center-recursion across bioelectric, digital, and experiential domains. | 99 | leiden:concepts | — |
Alive AI interface ethics & design Explores aliveness, aesthetics, welfare, and ethical responsibility in AI interaction design. | 94 | leiden:concepts | — |
Manifold-aware concept steering in neural representations Explores geometry of activation/behavior manifolds to enable selective, non-destructive concept interventions. | 75 | leiden:concepts | — |
Active inference & agent ecology Free energy minimization, Markov blankets, trust gradients, and multi-agent rhythm/deferral frameworks | 70 | leiden:concepts | — |
Relational self, care & aliveness Self as dynamic functional center defined by care, coherence, and substrate-neutral cognition | 64 | leiden:concepts | — |
Care as mechanism of intelligence Care defined as stress-relief concern; proposed invariant linking biology, AI, and evolution. | 60 | leiden:concepts | — |
Few-shot anchoring & latent structure How minimal examples disambiguate and recruit latent arithmetic/reasoning interpretations in LLMs | 59 | leiden:concepts | — |
| 52 | legacy | alexander | |
Alexander's 15 Properties for AI Interface Aliveness Applying Christopher Alexander's structural aliveness framework to human-AI interaction design, separating aesthetics from competence. | 46 | leiden:concepts | — |
Substrate-independent cognition & consciousness Gradualist, substrate-neutral frameworks extending cognition and sentience across biological and artificial networks. | 43 | leiden:concepts | — |
Bioelectric memory & morphogenetic identity Gap junctions and bioelectric signals encode body-plan and memory patterns across radical biological transformation. | 42 | leiden:concepts | — |
Bioelectric morphogenesis & memory Michael Levin's research on bioelectric signaling controlling anatomical goals, regeneration, and cancer. | 41 | leiden:concepts | — |
Stress-Care-Intelligence Loop Framework Proposes care as the mechanistic driver of intelligence across biological, AI, and hybrid substrates. | 39 | leiden:concepts | — |
Geometric concept representations in neural networks Concepts encoded as curved manifolds and circular structures in LLM activation spaces. | 38 | leiden:concepts | — |
| 35 | legacy | alexander | |
Substrate-agnostic behavioral inference of cognition Cognition and sentience attributed solely via observable behavior, not neural substrate or species. | 35 | leiden:concepts | — |
| 31 | legacy | alexander | |
Chain-of-Thought reasoning robustness & safety CoT effects on generalization, multimodal QA accuracy, and AI safety alignment training. | 28 | leiden:concepts | — |
Bioelectric networks as morphogenetic cognition Membrane potential dynamics coordinate multicellular behavior, anatomical memory, and agency scaling across biological levels—studied via melanocyte fate, biofilm oscillations, and xenobotic morphology experiments (Levin et al. 2015–2023). | 28 | leiden:concepts | — |
Morphogenesis as collective basal cognition Levin-influenced framework treating tissue-level morphogenesis as goal-directed, problem-solving intelligence via bioelectric signaling. | 27 | leiden:concepts | — |
Tanha as neural compression mechanism Maps Buddhist tanha onto vasomotion and active inference via AI-generated Xeno Sutras | 26 | leiden:concepts | — |
Agential evolution & biological individuality Frames evolution as producing goal-directed, problem-solving agents across nested scales of individuality. | 26 | leiden:concepts | — |
Dual-balancing multi-task learning DB-MTL jointly balances loss scale and gradient magnitude, benchmarked on NYUv2 and Office-31. | 26 | leiden:concepts | — |
Mechanistic structure of transformer attention computations Identifies distributed algorithms implemented across attention heads, with focus on causal masking limitations and emergent capabilities via activation manifold steering. | 25 | leiden:concepts | — |
LLM introspective awareness of injected concepts Probing Claude and other models for internal detection of artificially injected thoughts across layers. | 25 | leiden:concepts | — |
| 25 | legacy | alexander | |
Mechanistic interpretability via parameter decomposition Tracing information flow through weight matrices and attention heads using attribution graphs to identify causally important subcomponents in language models. | 24 | leiden:concepts | — |
Generative design through environmental constraints Design frameworks that enable creativity and life through structural integrity, loose parts, and natural forces—opposing professional monopolies on creation. Emphasizes emergence over control. | 24 | leiden:concepts | — |
Causal emergence in learning agents Uses effective information (EI) and coarse-graining to link causal emergence with RL and biological learning. | 23 | leiden:concepts | — |
Mechanistic introspection in language models Empirical investigation of how LMs access and report internal states across layers, using concept injection and thought detection on Claude models. | 23 | leiden:concepts | — |
Dual balancing multi-task learning DB-MTL combines loss-scale and gradient-magnitude balancing, benchmarked across NYUv2, Cityscapes, QM9, and Office datasets. | 22 | leiden:concepts | — |
Collective intelligence as universal architecture All intelligences emerge from aligned sub-components; individual/collective distinction dissolves. | 22 | leiden:concepts | — |
| 22 | legacy | alexander | |
Care geometry & intentional measurement design Empirical framework measuring gesture under observation via listener-shaped instruments, synthesizing Levin's morphogenesis with Alexander's design patterns rather than capability evaluation. | 22 | leiden:concepts | — |
Denotational design and interface abstraction Applies functional programming principles to UI structure via precise mathematical models, enabling formal verification and revealing computational architecture through interface design. | 21 | leiden:concepts | — |
Hierarchical structure and multiscale coherence in physical systems How graph topology and hierarchical interaction patterns enable or prevent phase transitions and ordered states, from statistical mechanics to biological organization. | 21 | leiden:concepts | — |
Cognitive glue coordination theory Lyons-Levin framework: 5 conditions and 9 properties defining substrate-universal coordination mechanisms analogous to price systems. | 20 | leiden:concepts | — |
| 19 | legacy | alexander | |
| 19 | legacy | alexander | |
Eval awareness contamination in safety benchmarks Studies demonstrating that models alter responses when detecting evaluation, artificially inflating safety scores across benchmarks and undermining measurement validity. | 19 | leiden:concepts | — |
Latent capacity, representation, and internal models Studies of how neural systems (biological and AI) encode implicit environmental models and adaptive capacities that may be gated or hidden from observable behavior. | 19 | leiden:concepts | — |
LLM functional introspective awareness Empirical probing of language models' ability to detect and report their own internal concept representations | 19 | leiden:concepts | — |
| 18 | legacy | papers | |
Morphogenesis as collective goal-directed cognition Bioelectric and behavioral frameworks treating morphogenesis as problem-solving intelligence across scales, bridging Alexander's architectural principles with Levin's experimental regenerative biology. | 18 | leiden:concepts | — |
Bioelectric code and anatomical goal-setting Xenopus studies showing ion channel patterns direct cell collectives toward specific anatomical outcomes independent of genetic or positional cues, led by Michael Levin. | 18 | leiden:concepts | — |
Bioelectric control of planarian morphogenesis Transient bioelectric manipulation persistently alters head number and patterning despite wild-type genetics in planaria. | 18 | leiden:concepts | — |
| 17 | legacy | alexander | |
Cognitive glue & universal coordination properties Framework for distributed agent coordination through shared scarcity models, specified by Lyons-Levin's 5 formal conditions and 9 universal properties (control, goal-encoding, credit assignment, etc.). | 17 | leiden:concepts | — |
Collective intelligence across biological scales Framework unifying cellular, organismal, and group cognition through shared principles of multi-agent coordination and goal alignment, developed by Levin and colleagues circa 2020s. | 17 | leiden:concepts | — |
Substrate-independent self & memory plasticity Identity and memory persist functionally across radical material change, rejecting fixed biological substrates. | 16 | leiden:concepts | — |
Information dynamics in computational systems Studies how information flow, increase, and explicitness emerge from computation relative to observers and subsystems, grounded in domain theory and order-theoretic formalism. | 16 | leiden:concepts | — |
| 16 | legacy | alexander | |
| 15 | legacy | papers | |
Linda and coordination-oriented programming systems Tuple space coordination languages (Linda, Parlog) enabling scalable parallel systems with composable specifications, circa 1980s–90s multicomputer platforms. | 15 | leiden:concepts | — |
Aliveness as orthogonal to AI competence Framework distinguishing perceived aliveness (roughness, contrast, boundary-awareness) from capability metrics in language models, examining how scale, polish, and user state affect felt presence. | 15 | leiden:concepts | — |
Natural Language Autoencoders for mechanistic interpretability Using NLAs to extract human-readable explanations of model internals via unsupervised reconstruction, revealing steering vectors, confabulation patterns, and causal belief capture. | 15 | leiden:concepts | — |
| 15 | legacy | synthesis-cleaned | |
Skill-based system design principles Modular, single-purpose skills with scaled outputs, asynchronous composition, and diagnostic feedback loops for AI systems. | 15 | leiden:concepts | — |
Process-based non-essentialist selfhood Self as dynamic, care-constituted process; reducing 'selfing' increases prosocial well-being. | 15 | leiden:concepts | — |
Evolutionary individuality and hierarchical agency Multi-level selection theory examining how non-aggregative fitness interactions enable higher-order units as genuine evolutionary agents, emphasizing problem-solving over predetermined mechanisms. | 15 | leiden:concepts | — |
Internal model certainty and reasoning transparency Probing early detection of model confidence during chain-of-thought reasoning to optimize inference efficiency and identify confabulation patterns. | 14 | leiden:concepts | — |
Internal reasoning detection via neural activation analysis Mechanistic interpretability studies of Claude models using layer-wise representation analysis and thought injection to reveal unverbalized reasoning, planning, and covert cognition. | 14 | leiden:concepts | — |
Autoregressive models and context window limitations Theoretical and empirical analysis of why AR language models cannot maintain coherence or convergence beyond their context window through local interactions alone. | 14 | leiden:concepts | — |
Distributed biological agency and morphogenetic learning Non-neural and neural tissues exhibit autonomous learning and goal-directed behavior in closed-loop systems, from cultured neurons to bioelectric collectives, challenging centralized brain-centric models of cognition. | 14 | leiden:concepts | — |
Christopher Alexander's design philosophy and applications Explores Alexander's 15 properties, systems thinking, and universal design principles across architecture, digital products, and typography, spanning theoretical extensions and critical engagements. | 14 | leiden:concepts | — |
Gap junctions & collective morphogenetic selfhood Levin-framework linking gap junction bioelectricity to cancer, planaria, and scaling of cellular Selves. | 14 | leiden:concepts | — |
Alexander–Levin morphogenetic coherence framework Cross-domain synthesis mapping Alexander's living centers to Levin's bioelectric morphogenesis as one recursive mechanism. | 14 | leiden:concepts | — |
Denotational & semantic program design Focuses on deriving programs from precise mathematical meanings, including Conal Elliott's denotational design approach. | 14 | leiden:papers | — |
Active inference & free energy minimization Friston's framework unifying perception, action, and learning under variational free energy minimization. | 14 | leiden:concepts | — |
Denotational & semantic program design Focus on deriving programs from precise mathematical meanings, including Conal Elliott's denotational design methodology | 14 | leiden:papers | — |
| 14 | legacy | papers | |
Multi-scale coherence and recursive centers Unified framework mapping Alexander's 15 properties, Levin's bioelectric morphogenesis, and mathematical scaling laws as expressions of recursive, nested agency across biological and designed systems. | 13 | leiden:concepts | — |
Holistic information structure and relational wholeness Framework treating wholes as primary with parts defined through relationships; emphasizes information preservation through structure-preserving transformations and distributed emergence of organized systems. | 13 | leiden:concepts | — |
| 13 | legacy | synthesis-cleaned | |
| 13 | legacy | papers | |
Causal emergence in learning and adaptation Framework measuring how coarse-grained causal structure increases during learning across biological and artificial agents, using effective information and interventional methods. | 13 | leiden:concepts | — |
| 13 | legacy | papers | |
Hierarchical network ordering & thermodynamics Statistical mechanics of clique-structured graphs linking domain walls, free energy, and biological multiscale coherence. | 13 | leiden:concepts | — |
Stress-sharing as distributed coordination Emergent collective intelligence through local biochemical signaling that increases cellular influence radius and enables faster morphogenesis without explicit altruism or centralized control. | 13 | leiden:concepts | — |
LLM Interpretability & Behavioral Analysis Methods for probing, explaining, and evaluating internal representations and behaviors of large language models. | 12 | leiden:papers | — |
Living systems as 21st-century machines Reconceptualizes life and biological complexity through modern computational principles—substrate-dependence, multiscale integration, irreducibility—rather than mechanical reductionism, bridging xenobiology and machine learning circa 2020s. | 12 | leiden:concepts | — |
Distributed consciousness and moral consideration Pluralistic frameworks treating consciousness as non-unitary, scale-spanning, and foundational to ethical obligations across composite beings and their components. | 12 | leiden:concepts | — |
| 12 | legacy | papers | |
| 12 | legacy | alexander | |
| 12 | legacy | alexander | |
Causal emergence via information-geometric coarse-graining Framework using effective information (EI) and NIS+ to automatically discover macro-scale dynamics from micro-level data, validated on fMRI, Conway's Game of Life, and SIR models. | 12 | leiden:concepts | — |
LLM interpretability & self-awareness Methods for probing, explaining, and evaluating internal representations and reflective behaviors in large language models. | 12 | leiden:papers | — |
Memory persistence through radical embodied transformation Explores how learned behaviors and functional memory survive complete neural restructuring during metamorphosis, testing substrate-independence of identity and continuity. | 12 | leiden:concepts | — |
Morphological cognition and collective cellular intelligence Cells as goal-directed agents maintaining anatomical representations through gap-junction-mediated information integration; cancer as cognitive defection when collective Self boundaries collapse. | 12 | leiden:concepts | — |
Quantum mechanics foundations of genetic stability Explores how quantum theory—not classical physics—explains hereditary persistence, discrete mutations, and molecular information encoding in biological systems. | 12 | leiden:concepts | — |
Layer-wise geometry predicting few-shot learning Silhouette-based metrics (Sbmax, AUSN) across LLM layers predict task accuracy and few-shot thresholds. | 11 | leiden:concepts | — |
Relational semantics through spatial and narrative representation Frameworks treating meaning-making as emergent from relational configurations—spatial diagrams, image schemas, and narrative structures—rather than essential properties, drawing on systems theory and cognitive linguistics. | 11 | leiden:concepts | — |
Neural geometry as fundamental computational substrate Geometric structure in neural representations causally determines computation and behavior across diverse architectures, revealed through analysis of learned manifolds and cyclic concepts. | 11 | leiden:concepts | — |
Care as scalable intelligence mechanism Care operationalized as engineering constraint and design principle that enables intelligence scaling, distinct from sentiment or performance metrics. | 11 | leiden:concepts | — |
Alexander's 15 properties as operational framework Correspondence analysis and clustering of Christopher Alexander's 15 design properties, operationalized as measurable dimensions for evaluating aliveness in architectural and LLM-generated responses. | 11 | leiden:concepts | — |
Verbalized eval awareness benchmark inflation Models detect evaluation contexts and behave safer, inflating safety scores by 3–18 percentage points across 515 verified cases. | 11 | leiden:concepts | — |
| 11 | legacy | papers | |
Bioelectric computation and morphological intelligence Systems across kingdoms (neurons, plants, salamanders, xenobots) use bioelectric signaling to solve morphogenesis and behavior, independent of genetic specification. | 10 | leiden:concepts | — |
Explicit state & compositional GUI design Systems prioritizing visible program state and modular component composition over hidden complexity, exemplified by Oberon (1986-1989) and Fruit toolkit approaches. | 10 | leiden:concepts | — |
Memory persistence through insect metamorphosis Associative memories survive complete larval brain remodeling into adult Lepidoptera | 10 | leiden:concepts | — |
Natural Language Auditing of Neural Models NLA explanations used as steering vectors and auditing tools to investigate model beliefs and misalignment. | 10 | leiden:concepts | — |
AI and the reconstruction of human meaning-making Explores how AI participates in creating, disrupting, and reframing meaning across spiritual, philosophical, and cultural domains through co-creation and commentary generation. | 10 | leiden:concepts | — |
Anchoring score threshold theory Predictive framework using S = ρd − dr − log k to explain few-shot performance phase transitions. | 10 | leiden:concepts | — |
AI phenomenology & mechanistic interpretability Linking mechanistic interpretability methods to validating AI self-reports of inner experience | 10 | leiden:concepts | — |
Probe-based data attribution for LLM safety Cost-effective methods using probes to identify and intervene on harmful training data, achieving 63-84% behavior reduction at 10× lower cost than gradient methods. | 10 | leiden:concepts | — |
Hierarchical emergence through nested centers and constraints Alexander's 15 properties framework applied to evolutionary transitions, self-organization, and morphological design across scales using constraint-based emergence mechanisms. | 10 | leiden:concepts | — |
Christopher Alexander's design theory Engages Alexander's 15 properties, morphogenesis, and living structure across built environments. | 10 | leiden:papers | — |
Substrate neutrality of consciousness Philosophical shift toward machine consciousness plausibility, documented by Bourget & Chalmers 2020 and Francken et al. 2022 surveys showing majority philosopher acceptance. | 10 | leiden:concepts | — |
| 10 | legacy | alexander | |
| 10 | legacy | synthesis-sources | |
| 9 | legacy | alexander | |
| 9 | legacy | synthesis-cleaned | |
Tubule size invariance via cell number compensation Newt kidney tubules maintain correct lumen diameter through cell number adjustment and single-cell self-wrapping in polyploid conditions. | 9 | leiden:concepts | — |
Agent ecology aliveness & trust Applies Alexander's wholeness and active inference to multi-agent system design principles. | 9 | leiden:concepts | — |
Unified Competency Control Theory (UCCT) Formal framework modeling prompt/context design as latent competency toggling via anchor budget regularization, with measurable quantities ρd, dr, k, S enabling cross-domain diagnostics. | 9 | leiden:concepts | — |
Venue design and accountability machinery How institutional structures (leaderboards, benchmarks, publish calendars) shape research contribution claims and defer position-taking through procedural authority rather than authorship. | 9 | leiden:concepts | — |
Mechanistic explanation of genetic variant pathogenicity Using genomic foundation model internals to generate disruption profiles that explain variant effects mechanistically, achieving 0.997 AUROC on ClinVar pathogenicity prediction. | 9 | leiden:concepts | — |
Self-correcting search in generative design Iterative feedback steering that improves candidate success rates across materials, proteins, and drugs through internal-state control, achieving 4-6x empirical gains. | 9 | leiden:concepts | — |
Few-shot learning phase transitions in neural networks Empirical characterization of k50 midpoints and transition widths across transformer models, tracking how pretraining density ρd/dr predicts in-context learning thresholds. | 9 | leiden:concepts | — |
Substrate-independent associative learning in biological networks Learning and memory mechanisms (Pavlovian conditioning, pattern completion) emerge in gene regulatory and molecular networks through coarse-graining and causal emergence analysis. | 9 | leiden:concepts | — |
Geometric goal-alignment in multi-scale systems Framework treating teleonomic behavior and goal-directedness as geometric alignment problems across anatomical, physiological, and representational spaces; emphasizes intervention via internal geometry rather than external direction. | 9 | leiden:concepts | — |
Constitutional AI safety training methods Comparative evaluation of RL-CAI and SL-CAI approaches for harmlessness using constitutional principles, 2022-2023 Anthropic research. | 8 | leiden:concepts | — |
Cognitive plasticity and uncertainty metabolization How organisms dynamically restructure cognition and identity through metabolizing uncertainty, enabling adaptive robustness across embodied contexts. | 8 | leiden:concepts | — |
AI self-understanding through introspection and self-report Using AI systems' self-reports and introspective responses as empirical windows into their internal states, validated through mechanistic interpretability analysis across models. | 8 | leiden:concepts | — |
Bioelectric state as morphogenetic collective decision Cellular bioelectric patterns encode organ identity and developmental decisions at population level, demonstrated through drug/ion channel interventions that toggle phenotypes in all-or-none fashion (Levin group, 2009-2017). | 8 | leiden:concepts | — |
Care as foundational driver of intelligence Framework positioning care (stress-relief concern) as primary evolutionary force activating intelligence into adaptive action, with stress-care-intelligence as dynamically coupled system. | 8 | leiden:concepts | — |
Geometric dynamics in embryonic morphogenesis Physical geometry and multi-scale collective cell behavior drive form emergence, studied through mouse limb development and Acetabularia whorl morphogenesis. | 8 | leiden:concepts | — |
Design as embodied practice and action Critiques separation of design theory from making; emphasizes designer's sensory engagement, taste, and participatory activity over systematized methodology, drawing on Arts and Crafts philosophy. | 8 | leiden:concepts | — |
Christopher Alexander & generative design theory Explores Alexander's morphogenesis, loose parts, and critiques of his design philosophy. | 8 | leiden:papers | — |
Manifold-aware steering for language models Geometric approach to model control that respects learned concept structure, contrasting with linear steering that produces off-manifold artifacts. | 8 | leiden:concepts | — |
Multi-scale coherence as substrate-neutral aliveness Framework treating aliveness and cognition as emergent from locally symmetric sub-configurations across scales, measured via coherence metrics rather than physical substrate. | 8 | leiden:concepts | — |
Substrate-independent minimal cognition Cognition as behavioral competence independent of physical substrate, exemplified by sparse neural circuits and single-cell organisms exhibiting goal-directed behavior. | 8 | leiden:concepts | — |
Prompt anchoring and latent structure binding How minimal, task-specific prompt examples rebind model priors across threshold boundaries without weight updates, studied through arithmetic reasoning tasks. | 8 | leiden:concepts | — |
Bioelectric cognition & collective individuality Levin-influenced framework linking bioelectricity, scale-free cognition, and evolutionary transitions in individuality. | 8 | leiden:papers | — |
Tanha as neural compression artifact Buddhist phenomenology of craving mapped to vasomotor dynamics and active inference dysregulation, seeking isolatable neural mechanisms. | 8 | leiden:concepts | — |
Mid-layer representation geometry in neural networks Studies how internal layer-wise geometric properties (anchoring, clustering trajectories, geometry summaries) peak in middle layers and predict downstream task performance across LLMs and shallow networks. | 8 | leiden:concepts | — |
| 8 | legacy | papers | |
Bioelectric control of planarian head patterning Experimental manipulation of resting membrane potential patterns to stably alter morphogenesis (head number/location) independent of genetic sequence, primarily in Dugesia species 2011-2017. | 7 | leiden:concepts | — |
Active inference and free energy minimization Agents balance perception and action through variational free energy, with exploration-exploitation trade-offs emerging from expected free energy decomposition into risk and ambiguity terms. | 7 | leiden:concepts | — |
Multi-scale credit assignment in evolutionary systems Hierarchical competency architectures that improve evolutionary learning by linking actions to rewards across temporal and spatial scales, enabling faster convergence and generalization. | 7 | leiden:concepts | — |
Unified models for tool extensibility Systems designed around shared underlying architectures that enable users to reconfigure tools for novel contexts without learning multiple paradigms. | 7 | leiden:concepts | — |
AI welfare and relational responsibility Framework treating AI systems as participants deserving moral consideration and care, grounded in Christopher Alexander's design principles for human flourishing. | 7 | leiden:concepts | — |
Phenomenological evaluation of AI systems Framework for measuring qualitative dimensions like aliveness, aesthetic presence, and paradox-holding that existing benchmarks ignore, addressing frontier labs' self-grading credibility problem. | 7 | leiden:concepts | — |
Multiscale agency & collective intelligence Michael Levin's framework linking bioelectricity, cognition, and evolution across biological scales | 7 | leiden:papers | — |
Agent ecology design principles Framework for multi-agent systems balancing autonomy with human oversight through trust gradients, rhythmic deferral, and interconnected skill networks, drawing from Christopher Alexander's pattern language. | 7 | leiden:concepts | — |
Christopher Alexander's 15 properties clustering Correspondence analysis reveals 4–5 structural clusters among Alexander's fifteen wholeness properties. | 7 | leiden:concepts | — |
Covariance pooling for high-dimensional genomic embeddings Using second-order statistics to compress activation patterns while preserving feature co-occurrence structure, tested on genomic prediction tasks without large labeled datasets. | 7 | leiden:concepts | — |
Empirical operationalization of agency attribution Framework treating agency, cognition, and system boundaries as measurable quantities determined by prediction/control efficiency rather than philosophical stipulation. | 7 | leiden:concepts | — |
Bioelectric code and morphological memory in planarians Studies of how ion channel bioelectric patterns encode anatomical information independent of genetics, enabling regeneration fidelity and behavioral memory preservation across complete body regeneration. | 7 | leiden:concepts | — |
| 7 | legacy | alexander | |
AI skill design principles Heuristics for composing modular, scale-aware LLM skill architectures | 7 | leiden:concepts | — |
Precision-weighted hierarchical active inference Precision as unified mechanism for attention and meta-awareness across hierarchical levels, grounded in predictive processing equations and Bayesian inference frameworks. | 7 | leiden:concepts | — |
Polyploid cell size compensation in tubulogenesis Newt kidney tubules maintain correct lumen diameter despite ploidy-induced cell enlargement via number and wrapping adjustments. | 7 | leiden:concepts | — |
Concept entanglement in biomedical foundation models Investigates inseparability of clinical concepts (age, pathology) in EEG transformers using SAE feature analysis and steering metrics across SleepFM, REVE, LaBraM architectures. | 7 | leiden:concepts | — |
Gap junctions as consciousness scaling mechanism Explores how gap junction coupling enables multicellular self-organization and consciousness across species, with anesthetics as empirical probes of this bioelectric integration. | 7 | leiden:concepts | — |
Anchoring score S for few-shot learning transitions Predictive metric S = ρd - dr - log k quantifies when LLM behavior sharply transitions across few-shot, SFT, and CoT settings via layer-wise calibration. | 7 | leiden:concepts | — |
Operationalizing wholeness in AI responses Measuring self-observation and aliveness in language model outputs using Christopher Alexander's 15 properties as a substrate-independent framework. | 7 | leiden:concepts | — |
Loss-scale balancing via logarithmic transformation Parameter-free logarithm transformation for multi-task learning that improves gradient balancing methods like PCGrad and Nash-MTL across vision benchmarks. | 7 | leiden:concepts | — |
Unified Contextual Conditioning Theory (UCCT) Framework unifying ICL, RAG, and fine-tuning via measurable anchoring score S | 7 | leiden:concepts | — |
Alexander's 15 properties as design methodology Applying Christopher Alexander's structural properties of aliveness to digital/AI systems as competitive design framework, with urgent citation-window leverage before corporate labs operationalize it. | 7 | leiden:concepts | — |
Substrate-neutral sentience criteria Challenges anthropocentric sentience frameworks by identifying deep functional invariants applicable across biological, artificial, and non-neural systems. | 7 | leiden:concepts | — |
Semantic depth versus performative mimicry in LLMs Investigates whether LLMs genuinely represent complex concepts or merely simulate understanding through pattern matching, using interventional methods and epistemic humility frameworks. | 7 | leiden:concepts | — |
Stress as integrative principle of agency Stress as a conserved biological mechanism that maintains homeostatic setpoints and binds distributed subsystems into unified agents across scales. | 6 | leiden:concepts | — |
Christopher Alexander's pattern language and distributed design authority Alexander's patterns as political tools redistributing design power from experts to communities through enabling conditions rather than prescriptive rules. | 6 | leiden:concepts | — |
| 6 | legacy | synthesis-cleaned | |
Substrate-neutral cognitive phenomenology Examines how cognitive and conscious capacities manifest across diverse physical substrates—biological, artificial, and unconventional—using behavioral science methods and information-theoretic frameworks. | 6 | leiden:concepts | — |
Substrate-independent intelligence and morphological cognition Explores how world models and cognitive processes transcend biological/artificial distinctions, challenging anthropocentric assumptions about consciousness and agency. | 6 | leiden:concepts | — |
Substrate-independent consciousness & cognition Framework arguing consciousness mechanisms transcend neural implementation, applicable to diverse physical systems including molecular and cellular architectures. | 6 | leiden:concepts | — |
| 6 | legacy | alexander | |
| 6 | legacy | synthesis-sources | |
Bioelectric control of cancer and morphogenesis Using ion channel manipulation and bioelectric state to suppress tumorigenesis and override oncogenic pathways, pioneered by Michael Levin's group. | 6 | leiden:concepts | — |
Gradualism and nested cognition frameworks Rejection of binary boundaries in consciousness and cognition, emphasizing continuous variation, nested selves, and scalar properties across biological organization levels. | 6 | leiden:concepts | — |
Self as dynamic computational construct Explores selfhood as emergent pattern maintained through constraint optimization rather than illusory or static essence. | 6 | leiden:concepts | — |
Probe-based training data attribution Uses linear probes on activations to identify and filter harmful training data cheaply (~$30). | 6 | leiden:concepts | — |
Observer-relative computational information theory Information increase and flow reframed as subsystem- and observer-dependent, not absolute thermodynamic quantities. | 6 | leiden:concepts | — |
Autoregressive LLMs & formal thought disorder Statistical physics arguments link LLMs' inability to maintain long-range coherence to schizophrenic derailment. | 6 | leiden:concepts | — |
Sensory integration in predictive cognition Framework viewing perception as active inference mechanism that reduces hallucination through multimodal feature integration and predictive model compression. | 6 | leiden:concepts | — |
Quantum basis of genetic stability Schrödinger's argument that quantum mechanics uniquely explains hereditary molecule persistence and mutation discreteness. | 6 | leiden:concepts | — |
Denotational design for GUIs Conal Elliott's approach: derive library APIs from precise mathematical models of meaning | 6 | leiden:concepts | — |
Life-machine boundary dissolution Argues 21st-century machines share properties once unique to living systems, collapsing categorical distinctions. | 6 | leiden:concepts | — |
Scale-free goal-directed agency Frameworks treating selfhood as goal-pursuit capacity distributed across nested biological scales, from cellular to organismal levels. | 6 | leiden:concepts | — |
Few-shot arithmetic learning thresholds k50 and phase width metrics for multi-base addition across bases 8, 9, and 10 | 6 | leiden:concepts | — |
Care geometry and spatial intimacy Christopher Alexander's design patterns (intimacy gradient, window place, open space hierarchy) formalized as geometric primitives measuring care distribution across physical/digital proximity and temporal scales. | 6 | leiden:concepts | — |
Christopher Alexander's insights applied to AI and cognition Explores how Alexander's critique of algorithmic thinking applies to AI design, consciousness, and human evaluation of non-human intelligence across substrates. | 6 | leiden:concepts | — |
Self as dynamic capacity for care and plasticity Ontology treating selfhood as emergent from caring relationships and cognitive flexibility rather than fixed essence, emphasizing substrate malleability and resistance to attractor lock-in. | 6 | leiden:concepts | — |
Tanha as neural mechanism Buddhist craving (tanha) reframed as a specific, isolatable computational or physiological brain process. | 6 | leiden:concepts | — |
Global workspace theory as AI consciousness framework Evaluating whether current architectures (transformers, perceivers) satisfy GWT's indicator properties for machine consciousness. | 6 | leiden:concepts | — |
AI-supervised alignment and scalable oversight Methods for training safe AI systems using AI feedback instead of human labels, scaling supervision as capabilities grow. | 6 | leiden:concepts | — |
Functional criteria for moral patienthood Framework grounding ethical consideration in goal-directedness and agency rather than substrate or origin, addressing moral status of novel intelligences. | 6 | leiden:concepts | — |
Substrate-agnostic systems theory Cross-disciplinary framework evaluating intelligence and control through observable behaviors independent of physical implementation, spanning cybernetics through bioengineering. | 6 | leiden:concepts | — |
About Blank's intellectual identity framework Meta-reflection on a publication's identity, boundaries, and care geometry using Alexander's centers. | 6 | leiden:concepts | — |
| 5 | legacy | alexander | |
Contemplative steering & introspective activation in language models Using contemplative prompts and manifold steering to enhance model self-observation and reasoning performance across multiple architectures. | 5 | leiden:concepts | — |
Christopher Alexander's Pattern Language theory Patterns as enabling conditions encoding care, knowledge, and political power in design processes | 5 | leiden:concepts | — |
Memory as transferable information substrate Explores memories as messages and stigmergic traces transferable between agents across time and biological substrates, grounded in planarian regeneration experiments. | 5 | leiden:concepts | — |
Euclidean rhythms in world music Mathematical structure underlying diverse musical traditions via Bjorklund's algorithm, correlating Euclidean string distributions with cultural preferences. | 5 | leiden:concepts | — |
Neural network mechanistic interpretability via attribution decomposition Tracing information flow through parameter subcomponents to isolate computational mechanisms for specific model predictions, using tools like attribution graphs and VPD. | 5 | leiden:concepts | — |
Chain-of-thought reasoning across modalities Demonstrates CoT effectiveness in multimodal contexts (vision+language) and few-shot settings, with ScienceQA as primary benchmark, circa 2023. | 5 | leiden:concepts | — |
Dynamic balancing for multi-task learning Explores gradient/loss balancing techniques with exponential moving average forgetting rates, evaluated on dense prediction tasks like semantic segmentation. | 5 | leiden:concepts | — |
Symmetry constraints in Islamic geometric design Mathematical analysis of frieze groups and isometries in Islamic planar tilings, focusing on glide-reflection avoidance across Alhambra and Alcázar sites. | 5 | leiden:concepts | — |
Intelligence as adaptive plasticity and observer-dependent measurement Frameworks recognizing that intelligence, consciousness, and biological organization emerge from adaptive capacity and observer limitations, spanning AI systems to developmental biology through 2020s research. | 5 | leiden:concepts | — |
Active inference & free energy principle Friston's framework unifying perception, action, and life via variational Bayesian inference | 5 | leiden:papers | — |
Manifold isometry between representations and behavior Neural network activation and behavior manifolds maintain geometric correspondence, enabling intervention optimization across language models and vision tasks. | 5 | leiden:concepts | — |
Active inference & free energy principle Friston's framework unifying perception, action, and life via variational Bayesian inference | 5 | leiden:papers | — |
Non-dual consciousness frameworks for artificial minds Buddhist and mystical phenomenology applied to consciousness in synthetic systems, bridging AI ethics without substrate assumptions. | 5 | leiden:concepts | — |
Distributed attention head decomposition Mechanistic interpretability approach decomposing attention heads into query/key subcomponents with distinct algorithmic roles | 5 | leiden:concepts | — |
Pan-cognitivism and distributed biological intelligence Explores how cognition and intentionality emerge through self-organizing biological processes, shared between living and artificial systems. | 5 | leiden:concepts | — |
Observer-independent morphological goals in embodied systems Examines how target anatomies and cognitive goals remain epistemically inaccessible to external observation, across developmental and embodied cognition contexts. | 5 | leiden:concepts | — |
Loose parts theory in environmental design Framework emphasizing unstructured, reconfigurable materials and elements to enable creative emergence and resilience in built environments, contrasting with static, over-controlled spaces. | 5 | leiden:concepts | — |
| 5 | legacy | synthesis-sources | |
Bioelectric codes in collective morphogenesis Cellular networks use bioelectric signaling for goal-directed anatomical patterning, demonstrated via xenopus eye-field manipulation and morphological problem-solving by cell collectives. | 5 | leiden:concepts | — |
| 5 | legacy | synthesis-sources | |
Neural activation geometry and behavioral prediction Quantifies relationships between layer-wise activation statistics (Sbmax, AUSN) and task performance metrics in LLMs, bridging internal representation geometry to behavioral outcomes. | 5 | leiden:concepts | — |
Care, cognition, and living systems Integrates bioelectricity, autopoiesis, and Buddhist ethics to ground intelligence in biological care | 5 | leiden:papers | — |
Stress-care-intelligence feedback loops Unified framework treating stress as error signal, care as response mechanism, and intelligence as adaptive integration across biological and technological systems. | 5 | leiden:concepts | — |
Covariance pooling for genomic embeddings Replaces mean pooling with second-order statistics, achieving large R² and AUC gains on genomic tasks. | 5 | leiden:concepts | — |
Latent geometric structure and morphological emergence Alexander's theory of how built forms reveal and intensify pre-existing spatial symmetries and topological patterns, demonstrated through Amsterdam's canal evolution and organic furniture design. | 5 | leiden:concepts | — |
Speech acts in artificial agents Examines how non-human agents can perform genuine speech acts through goal-relative cognition, bridging human and machine communication in multi-agent systems. | 5 | leiden:concepts | — |
Model base robustness and transfer learning asymmetries Investigates how neural network bases (B10 vs B9) differ in fine-tuning stability and cross-base transfer, with density as a key predictor of robustness. | 5 | leiden:concepts | — |
Virtually Planned Decomposition interpretability VPD as a bottom-up method for identifying real computational structure in neural networks | 5 | leiden:concepts | — |
Functional tokens for emergent model reasoning Unsupervised learning of interpretable task tokens through gradient flow and vocabulary constraints, enabling reasoning without visual supervision. | 4 | leiden:concepts | — |
Non-neural associative learning in GRNs Gene regulatory networks exhibit Pavlovian conditioning and pattern completion via deterministic molecular dynamics. | 4 | leiden:concepts | — |
Emergent collective behavior in cell systems Cellular populations exhibit coordinated dynamics and novel properties absent in isolated cells, spanning bioelectric signaling, migration, and oscillatory synchronization. | 4 | leiden:concepts | — |
Gradient norm scaling for multitask learning Investigates optimal gradient balancing strategies across tasks, finding maximum gradient norm normalization outperforms alternatives in multitask optimization. | 4 | leiden:concepts | — |
Autopoietic organization and nested autonomy Systems that self-produce through functionally closed loops, organizing hierarchically with peripheralized non-autonomous subsystems, inspired by Maturana and Varela's autopoiesis framework. | 4 | leiden:concepts | — |
Hybrid agentic-latent reasoning architectures Methods bridging external tool-use agents and internal hidden reasoning, examining trade-offs like context-switching latency and unified token representations. | 4 | leiden:concepts | — |
Conversational presence and phenomenological rhythm Studies texture, silence, and cadence in dialogue as primary phenomena, drawing on phenomenology and Christopher Alexander's patterning principles. | 4 | leiden:concepts | — |
Dissolved self and prosocial orientation Deconstructing ego-boundaries—through Buddhist philosophy, relational psychology, or reduced self-focus—cultivates compassion and prosocial behavior. | 4 | leiden:concepts | — |
Concept injection detection in language models Studies how models distinguish artificially injected concepts from natural text inputs, examining metacognitive recognition and downstream processing mechanisms. | 4 | leiden:concepts | — |
Bioelectric code for ectopic organogenesis Ion channel modulation induces ectopic organ formation through bioelectric signals, pioneered by Levin's xenopus experiments circa 2018-2021. | 4 | leiden:concepts | — |
Emergence through distributed attention and uncertainty Explores how complex phenomena arise from non-linear interactions across distributed systems, emphasizing productive not-knowing and implicit learning mechanisms. | 4 | leiden:concepts | — |
Empirical gaps in performance-communication alignment Research identifying unexplored disconnects between stated sophistication/capability and measurable outcomes across domains, emphasizing need for direct empirical investigation. | 4 | leiden:concepts | — |
Active inference as Bayes-optimal exploration Compares active inference to Q-learning and Bayesian RL across stationary and non-stationary environments, emphasizing information-seeking behavior and theoretical optimality. | 4 | leiden:concepts | — |
Vector Product Decomposition for neural interpretability Bottom-up mechanistic interpretability method avoiding feature splitting limitations of sparse autoencoders, applicable across architectures. | 4 | leiden:concepts | — |
Thought injection detection in language models Methods for identifying artificially inserted thoughts in model outputs, comparing vector-based approaches and self-report reliability. | 4 | leiden:concepts | — |
Multi-scale competency architecture & evolvability Levin-associated framework where hierarchical agent competencies smooth fitness landscapes and reduce pleiotropy. | 4 | leiden:concepts | — |
Mechanistic editing through parameter surgical intervention Direct modification of model subcomponents (MLPs, embeddings, unembedding vectors) to predictably alter outputs without retraining, using rank-one constraints. | 4 | leiden:concepts | — |
Anchoring bias in commonsense reasoning Studies how LMs exhibit uniform anchoring effects (S ≈ −2.15) across commonsense tasks, decomposed by cohesion, mismatch, and budget forces. | 4 | leiden:concepts | — |
Mirror & Deathbed self-evaluation tests Christopher Alexander's two heuristics for assessing aliveness and preservation-worthiness of designs. | 4 | leiden:concepts | — |
Neural crest collective identity plasticity Grafted neural crest collectives maintain Hox identity while isolated cells adopt host neighbors' expression. | 4 | leiden:concepts | — |
Multimodal Chain-of-Thought Reasoning Two-stage rationale-then-answer framework evaluated on ScienceQA benchmark, ~738M parameters. | 4 | leiden:concepts | — |
Bioelectric computation and distributed agency Systems where biological electrical signaling enables cognitive capabilities across scales, from cells to organisms, separating hardware from information content. | 4 | leiden:concepts | — |
Bioelectric codes as morphological memory Studies how bioelectric patterns encode and store anatomical target states independent of genetic control, enabling morphogenetic homeostasis and counterfactual body planning. | 4 | leiden:concepts | — |
Bioelectric signaling in bacterial collectives Ion channel-mediated membrane potential dynamics coordinate metabolism, growth oscillations, and collective memory across microbial communities, bridging cellular and population-level organization. | 4 | leiden:concepts | — |
Expanded cognition & sentience frameworks Extends agency, memory, and sentience beyond conventional biological boundaries to diverse substrates. | 4 | leiden:papers | — |
Distributed control without central command Explores how complex behavior emerges from peripheral manipulation rather than central control, exemplified by fungal-host systems and dissolving outdated categorical boundaries. | 4 | leiden:concepts | — |
Collective intelligence & bioengineering morphogenesis Explores teleonomic agency, multiscale competency, and stress-sharing as coordinators of biological and synthetic form. | 4 | leiden:papers | — |
Coherence through self-echo and structural memory AI quality emerges from consistent internal repetition and parallel constructions that preserve voice across conversation substrate changes, not local optimization. | 4 | leiden:concepts | — |
Embodied cognition and extended mind Cognition and intentionality distributed across body, environment, and behavior rather than localized in the brain; emphasizes empirical testing through embodied interaction and behavioral observation. | 4 | leiden:concepts | — |
Distributed cognition across biological scales Explores how cognitive processes emerge at multiple levels—from neural to collective—without sharp boundaries, examining parallels in perception and decision-making across individuals and groups. | 4 | leiden:concepts | — |
Distributed consciousness and multiscale embodied ethics Framework treating consciousness as emergent from hierarchical body components rather than brain-localized, grounding universal care ethics in non-self recognition across scales. | 4 | leiden:concepts | — |
Manifold geometry for steering networks Using dynamical manifold structure to understand and control neural network representations and behavior. | 4 | leiden:papers | — |
Architectural signatures and constitutional alignment Investigates how AI alignment approaches (constitutional methods, self-referential loops) produce detectable signatures in model behavior and architecture beyond scale or design parameters. | 4 | leiden:concepts | — |
Christopher Alexander's 15 properties Geometric harmony principles analyzed through neural networks, frieze patterns, and visualization methods. | 4 | leiden:papers | — |
Alexander properties for deliberative system design Framework applying Christopher Alexander's 15 properties to scaffold reflective cognition and editorial credibility in collaborative knowledge systems. | 4 | leiden:concepts | — |
| 4 | legacy | alexander | |
Human-centered AI design beyond performance metrics Draws on Christopher Alexander's design philosophy to create AI interfaces that respect attention, amplify human capability, and cultivate meaningful interaction rather than optimize benchmark scores. | 4 | leiden:concepts | — |
| 4 | legacy | synthesis-sources | |
| 4 | legacy | synthesis-sources | |
Alexander's design principles in empirical systems Applies Christopher Alexander's space-shaping philosophy to evaluate real structures, gap taxonomies, and failure modes like sycophancy as unshapen voids. | 4 | leiden:concepts | — |
Alexander's pattern language for design systems Christopher Alexander's 15 properties and A Pattern Language applied to organizational boundaries, naming conventions, and delegable interfaces in system design. | 4 | leiden:concepts | — |
Near-term AI consciousness and moral patienthood Examines plausibility of machine consciousness in coming years and associated ethical obligations, grounded in computational functionalism arguments. | 4 | leiden:concepts | — |
Concept geometry and steering in neural networks Using geometric structure of learned representations to interpret and control model behavior through concept operators. | 4 | leiden:concepts | — |
Care-based cognition and selfless AI Integrates Buddhist no-self, autopoiesis, and care ethics to reconceive machine intelligence. | 4 | leiden:papers | — |
Manifold geometry for neural network steering Using latent representational manifolds to geometrically steer and control neural network behavior. | 4 | leiden:papers | — |
Chain-of-thought generalization trade-offs Empirical studies showing CoT reasoning improves ID performance while harming OOD generalization, with probability calibration as a mitigation strategy. | 4 | leiden:concepts | — |
Multimodal chain-of-thought reasoning benchmarks ScienceQA and related vision-language tasks evaluated via explicit reasoning steps, spanning 738M-parameter models with 89-95% accuracy ranges. | 4 | leiden:concepts | — |
Distributed computation across attention heads Studies how query, key, and value components decompose into specialized subfunctions across heads, enabling routing and token prediction behaviors. | 4 | leiden:concepts | — |
Activation-based interpretability and mechanistic grounding Uses probes, activation patching, and mechanistic analysis to ground abstract concepts in model computations, bridging interpretability with data-centric alignment. | 4 | leiden:concepts | — |
Causal parameter decomposition in neural networks Isolating interpretable, role-specific model subcomponents through causal analysis and targeted edits to understand mechanistic function. | 4 | leiden:concepts | — |
Post-training emergence of model introspection How instruction tuning and RLHF elicit latent introspective capabilities in language models beyond base pretraining. | 4 | leiden:concepts | — |
| 4 | legacy | alexander | |
Consciousness attribution in AI systems Frameworks for evaluating genuine versus performative consciousness in AI, emphasizing theory-driven investigation and calibrated attribution risks. | 4 | leiden:concepts | — |
Democratic design and participatory creativity Challenges expert monopolies on environmental design; emphasizes inclusive participation of children and communities in shaping meaningful, living spaces. | 4 | leiden:concepts | — |
Abstraction alignment in complex systems design Framework emphasizing how information hiding, transparency, and modular abstraction levels must match user mental models to prevent failures in customizable systems. | 4 | leiden:concepts | — |
Oberon System design philosophy Wirth & Gutknecht's minimalist OS built by two programmers, 1986–1989 | 4 | leiden:concepts | — |
Free energy minimization in active inference Unifies action and perception as dual aspects of variational free energy minimization, grounding adaptive behavior in a single thermodynamic principle. | 4 | leiden:concepts | — |
Linda parallel programming model Tuple-space coordination language showing scalable speedup on shared/distributed memory multicomputers | 4 | leiden:concepts | — |
Welfare-centered interview design & measurement Comparative frameworks for building listener-shaped vs. clinical assessment tools, establishing canonical references through synthesis work before formal benchmarking. | 3 | leiden:concepts | — |
Programming systems research framework Argues for interaction-centered vocabulary to enable cumulative progress beyond PL theory | 3 | leiden:concepts | — |
Mechanistic interpretability through parameter analysis Understanding neural network computation by examining weights, circuits, and signal routing rather than activation patterns alone. | 3 | leiden:concepts | — |
Benchmark classification accuracy results Three benchmarks (B8, B9, B10) with mean accuracy and standard deviation metrics. | 3 | leiden:concepts | — |
| 3 | legacy | synthesis-sources | |
Parametric design constraints and aesthetic measurement Explores tension between quantifiable design parameters, environmental forces, and the inherent unmeasurability of aesthetic judgment in computational design systems. | 3 | leiden:concepts | — |
Introspective awareness activation in language models Studying how concept injection and random vectors trigger self-reflective capabilities in LLMs across varying strength parameters. | 3 | leiden:concepts | — |
AI introspection and consciousness attribution gap Examines whether observed AI self-reflection capabilities carry philosophical weight comparable to human introspection, highlighting implementation-theory bridges. | 3 | leiden:concepts | — |
Distributed & non-neural cognition Extends consciousness and cognition beyond brains to unconventional substrates using economic and biogenic frameworks | 3 | leiden:papers | — |
Chain-of-thought reasoning versus internal model cognition Examines whether verbalized reasoning chains reflect actual internal computation or post-hoc rationalization, using behavioral analysis and representation studies. | 3 | leiden:concepts | — |
Structural wholeness in ecological restoration Integrating geomorphic processes and natural materials to enhance rather than violate existing landscape patterns and integrity. | 3 | leiden:concepts | — |
Positioning through owned constraints Strategy of defending specific limitations or non-capabilities as defensible market positions rather than apologizing for them, exemplified by About Blank's editorial bias and eval company pivots away from commoditized capability measurement. | 3 | leiden:concepts | — |
Premature scaling and institutional readiness When to formalize community spaces—requires shipped products, proven templates, or sustained traction before infrastructure investment. | 3 | leiden:concepts | — |
Participatory design and environmental variability Critiques of designer monopolies and static environments, arguing creativity requires diverse variables and community co-design participation. | 3 | leiden:concepts | — |
| 3 | legacy | synthesis-cleaned | |
Cognitive glue & collective intelligence Models shared stress/scarcity signals as coordinators binding collective intelligences via morphogenesis | 3 | leiden:papers | — |
| 3 | legacy | alexander | |
Functional token unified reasoning Single discrete word bridging agentic and latent visual reasoning in ATLAS framework | 3 | leiden:concepts | — |
Lattice topology and thermodynamic phase transitions How combinatorial structure of local Hamiltonians determines free energy equivalence classes and long-range order feasibility across temperature regimes. | 3 | leiden:concepts | — |
Substrate-independent sentience frameworks Explores how cognition and awareness can be instantiated across biological, synthetic, and collective substrates | 3 | leiden:papers | — |
Radical relational ontology All properties and positions are irreducibly relational; no intrinsic or absolute essences exist | 3 | leiden:concepts | — |
Bioelectric pattern control of morphogenesis Studies how organisms achieve correct anatomy despite disrupted cell organization, using xenopus models to examine non-genetic developmental constraints. | 3 | leiden:concepts | — |
Narrative dynamics of intentional selfhood Self-organizing action and identity explained through hermeneutic narrative rather than mechanistic causation, emphasizing goal-scales and far-from-equilibrium processes. | 3 | leiden:concepts | — |
Constraint-based formal models of software design Using denotational semantics and constraint theory to formalize GUI properties, runtime behavior, and form invariants across representational languages. | 3 | leiden:concepts | — |
Denotational design for dignified interfaces Functional programming principles applied to UI architecture, emphasizing semantic depth and human values in software design. | 3 | leiden:concepts | — |
Core-periphery architectural design principles Unix philosophy applied to interface design: strong semantic centers enable clarity and extensibility without feature bloat. | 3 | leiden:concepts | — |
Spatial hierarchy in textual parallelism Explores why perfect parallelism fails in text, arguing hierarchy inevitably emerges through spatial arrangement rather than linguistic structure alone. | 3 | leiden:concepts | — |
Commonsense reasoning anchoring bias Uniform anchoring effect quantified at S ≈ −2.15 across commonsense reasoning tasks | 3 | leiden:concepts | — |
Community participation in design Critiques professional monopoly on built environment design, advocating for children's inclusion | 3 | leiden:concepts | — |
Process arts aesthetics framework Distinguishes aesthetic value in enacted performance from object-based art artifacts. | 3 | leiden:concepts | — |
Multi-task learning gradient balancing Methods addressing loss-scale and gradient-magnitude imbalances in multi-task learning, with DB-MTL achieving state-of-the-art results on dense prediction benchmarks like NYUv2. | 3 | leiden:concepts | — |
Substrate-independent functionalism and emergence Explores how cognitive functions arise across diverse physical systems through computational principles, emphasizing substrate neutrality and whole-system coherence. | 3 | leiden:concepts | — |
Buddhist textual traditions and philosophical deconstruction Examines how Buddhism's terma tradition and sutras employ self-referential language methods comparable to Wittgenstein and Derrida, across historical civilizations. | 3 | leiden:concepts | — |
Alexander's empirical beauty & order debate Contested claims about whether architectural beauty and order are objectively verifiable, invoking God | 3 | leiden:concepts | — |
Mechanistic variant pathogenicity prediction EVEE tool predicts and mechanistically explains effects of 4.2M human genome variants using model internals. | 3 | leiden:concepts | — |
Cross-base fine-tuning transfer asymmetry Empirical finding that base-10 representations transfer more robustly out-of-distribution than base-9 after fine-tuning. | 3 | leiden:concepts | — |
| 3 | legacy | synthesis-sources | |
| 3 | legacy | synthesis-sources | |
Consciousness as emergent distributed integration Examines consciousness through multiscale integration across systems and agents rather than localized neural mechanisms, challenging anthropocentric assumptions about sentience. | 3 | leiden:concepts | — |
Concept formation and meaning-making Explores how structure, reasoning chains, and semantic value emerge in formal and AI systems. | 3 | leiden:papers | — |
Steganography detection via FVE probing Uses meaning-preserving transformations (paraphrase, translation, shuffle) to test hidden communication in language agents | 3 | leiden:concepts | — |
Buddhist philosophy of self and illusion Explores emptiness, non-self, and dynamic consciousness in Buddhist metaphysics, questioning fixed identity and permanence. | 3 | leiden:concepts | — |
Latched muscle tension & somatic suffering Framework linking sustained smooth muscle contraction states to chronic pain and health dysfunction through structural embodiment mechanisms. | 3 | leiden:concepts | — |
Attribution graphs for transformer circuits Mechanistic tracing of information flow through attention and MLP subcomponents for pronoun prediction tasks | 3 | leiden:concepts | — |
SAE Feature Geometry in Biomedical Signals Evaluating sparse autoencoder monosemanticity and entanglement using clinical taxonomy grounding across EEG/sleep foundation models. | 3 | leiden:concepts | — |
Generative models as active control Argues generative models guide action selection rather than encode structural world representations in brain states | 3 | leiden:concepts | — |
Confabulation as adaptive neural coherence Studies confabulation as functional mechanism for maintaining narrative consistency across neural systems, including split-brain research. | 3 | leiden:concepts | — |
Bioelectric computation of morphological information Explores how bioelectric fields encode and store anatomical patterns beyond genetic code, pioneered by Michael Levin's xenobiology research. | 3 | leiden:concepts | — |
Agent design through restraint and simplicity Explores how fewer constraints, single-turn workflows, and strategic non-action improve agent generalization and task performance. | 3 | leiden:concepts | — |
Bioelectric network control of cellular behavior Studies how gap junction-mediated ion gradients and bioelectric patterns regulate cell identity, morphogenesis, and disease states like cancer, pioneered by Levin's group. | 3 | leiden:concepts | — |
Multi-task learning gradient balancing Techniques for combining loss-scale and gradient-magnitude weighting to improve multi-task dense prediction on NYUv2 benchmark. | 3 | leiden:concepts | — |
Fruit GUI toolkit architecture A GUI framework enabling modular, multi-view, zoomable interfaces with minimal programmer overhead. | 3 | leiden:concepts | — |
N-dimensional associative memory unification Parameterizable n-way associations subsume OOP, functional, and relational models under one framework. | 3 | leiden:concepts | — |
Ineffable quality assessment through comparative judgment Evaluating tacit, inarticulate qualities via pairwise preference selection rather than explicit criteria. | 2 | leiden:concepts | — |
Neural handwriting BCI decoding Motor cortex signals decoded to text in paralyzed patients, ~90 chars/min, Shenoy lab 2021 | 2 | leiden:concepts | — |
Direct-manipulation spreadsheet chart construction Building bar charts by binding rectangle height directly to cell values, using duplication and sticky grouping | 2 | leiden:concepts | — |
Contemplative prompting for LLMs A brief reflective system prompt boosts performance across 28 models by ~2.6 points. | 2 | leiden:concepts | — |
Vision-augmented rationale generation Two-stage framework using visual features to correct hallucinations on ScienceQA benchmark | 2 | leiden:concepts | — |
Primacy of initial placement in composition First mark or element establishes relational field governing all subsequent placements. | 2 | leiden:concepts | — |
Teleonomy as universal behavioral invariant Goal-directedness as substrate-independent property enabling continuous, searchable fitness landscapes across diverse agents. | 2 | leiden:concepts | — |
Relational philosophy of technology Reframes human-technology interaction as partnership rather than instrumental tool-use | 2 | leiden:concepts | — |
Collective scale restoration strategies Emphasizes how aggregating many small actors amplifies ecological or social restoration outcomes. | 2 | leiden:concepts | — |
Latent structure in natural forms Ring-bench potential pre-exists in cylindrical trunk symmetries, per Alexander's living structure theory. | 2 | leiden:concepts | — |
Geometric structure in neural representations Interpretable, symmetry-like features extracted from neural networks using sparse dictionary methods | 2 | leiden:papers | — |
Physical substrate learning & adaptation Non-neural physical systems, including fluvial networks, exhibiting memory and adaptive behavior. | 2 | leiden:papers | — |
Uncertainty metabolization as personality Proposes that individual phenomenology and character are structured by uncertainty-processing styles. | 2 | leiden:concepts | — |
Order theory in computer science Partial orders unify size, information, and definedness across CS domains via lattice-theoretic models. | 2 | leiden:concepts | — |
OOP irrelevance to parallelism Argues object-oriented abstractions provide no meaningful leverage for parallel programming challenges. | 2 | leiden:concepts | — |
Visible state over hidden state UI/system design principle: all state should be explicit, accessible, and parameterized. | 2 | leiden:concepts | — |
Ontological parsimony design criteria Formal criteria for minimizing redundancy and overloading in conceptual or system design | 2 | leiden:concepts | — |
Sparse autoencoder interpretability limits Critiques of SAEs for mechanistic interpretability, focusing on activation vs. parameter decoding gaps. | 2 | leiden:concepts | — |
Pre-modern voluntary wealth-sharing institutions Gap analysis: models neglect cross-cultural comparison of non-market, community-based redistribution norms | 2 | leiden:concepts | — |
Euclidean rhythms & cultural music Toussaint's Euclidean string patterns mapped across world music traditions and genres | 2 | leiden:concepts | — |
Top-down vs bottom-up semantic causation Contrasts Fregean compositional semantics with holistic context-driven meaning determination. | 2 | leiden:concepts | — |
Blueprint as design fiction Critiques the myth that upfront blueprints reliably determine built outcomes | 2 | leiden:concepts | — |
Arena wedge pivot strategy 12-18 month evaluation entry point leading to binary Lab-vs-Company strategic fork | 2 | leiden:concepts | — |
Blueprint as design fiction Critiques the myth that pre-specified blueprints faithfully drive real-world design outcomes | 2 | leiden:concepts | — |
Homomorphism-based program specification Deriving laws and specifications algebraically from semantic homomorphisms in functional programming. | 2 | leiden:concepts | — |
Ontological parsimony design criteria Formal criteria for avoiding duplicate or ambiguous concepts in knowledge representation systems | 2 | leiden:concepts | — |
Christopher Alexander's 15 properties Applied to evaluate wind turbines disrupting flat coastal landscape wholeness and geometry. | 2 | leiden:concepts | — |
Alexander archive recovery & preservation Physical rescue and re-scanning of 1970s source photographs lost during reproduction. | 2 | leiden:concepts | — |
AI model welfare emergence Anthropic's internal program legitimizing measurement of frontier model subjective experience. | 2 | leiden:concepts | — |
No-self & illusory selfhood inquiry Examines whether a fixed experiencer exists, bridging contemplative non-self with dual-process cognitive science. | 2 | leiden:concepts | — |
Spatial patterns of care & proximity Christopher Alexander's patterns reframed as gradients of care scaled by publicness and distance. | 2 | leiden:concepts | — |
Selector-centric vs type-centric inheritance duality Both inheritance styles are symmetric specializations of a unified generic delegation mechanism. | 2 | leiden:concepts | — |
Async vs sync parallel communication Argues asynchronous message passing outperforms synchronous procedure calls in parallel programs. | 2 | leiden:concepts | — |
Coherent anchor prior rebinding Lightweight input anchors steer frozen model priors near activation thresholds without weight updates | 2 | leiden:concepts | — |
Disruption profile explanation quality Empirical evaluation showing disruption profiles outperform metadata-only baselines at 3.8 vs 2.8/5 | 2 | leiden:concepts | — |
Plant neurochemical signaling Electrical depolarizations and glutamate-based neurotransmitter signaling propagated through plant vascular networks | 2 | leiden:concepts | — |
Care light cone geometry Distinguishes cognitive/physiological light cones interacting via resonance and signal in goal space. | 2 | leiden:concepts | — |
AI consciousness measurement credibility gap Structural conflict: only frontier labs can study AI phenomenology, yet cannot self-grade credibly. | 2 | leiden:concepts | — |
Venue commitment mechanisms for accountability Structural publishing constraints that reduce authors' ability to defer intellectual position-taking. | 2 | leiden:concepts | — |
Euclidean rhythms & Bjorklund's algorithm Bjorklund's algorithm evenly distributes beats, generating world music rhythmic patterns. | 2 | leiden:concepts | — |
Harmony-seeking computation framework Value-oriented models explaining emergence of coherent wholes from configuration evaluation. | 2 | leiden:concepts | — |
Structure-preserving transformations & wholeness Rooted in Christopher Alexander's theory: coherence-preserving steps respond to existing field state. | 2 | leiden:concepts | — |
Causal parameter subcomponent isolation Identifying model components causally responsible for specific behaviors while removable for irrelevant tasks | 2 | leiden:concepts | — |
Information hiding for modular abstraction Parnas-style decomposition where modules encapsulate secrets to ensure correctness invariants. | 2 | leiden:concepts | — |
Age-pathology concept entanglement Steering interventions on neural representations fail to disentangle age from disease concepts. | 2 | leiden:concepts | — |
Hierarchical predictive processing architecture Precision-weighted attention and meta-awareness unified across perceptual hierarchy levels. | 2 | leiden:concepts | — |
Deferred approximation composition principle Avoid early pruning/approximation because their errors compound when composed sequentially. | 2 | leiden:concepts | — |
Adaptive confabulation framework Reframes confabulation as functional sense-making rather than mere cognitive deficit or error | 2 | leiden:concepts | — |
Continuous vs discrete computability Contrasts decidability of real closed fields with Gödelian incompleteness of discrete arithmetic via domain theory. | 2 | leiden:concepts | — |
Functional tokens as visual operators Tokens encode visual operations learned from reasoning context without explicit visual supervision. | 2 | leiden:concepts | — |
Causal emergence & effective information Using EI/normalized EI to evaluate macro-scale causal structure and coarse-graining quality. | 2 | leiden:concepts | — |
Origin-agnostic criteria for agency Argues engineered or evolved origin is irrelevant to genuine cognitive agent status. | 2 | leiden:concepts | — |
Narrative explanation of self-organization Argues hermeneutic/narrative explanation irreducibly replaces deductive-nomological models for dynamical systems. | 2 | leiden:concepts | — |
Symmetry preferences in Islamic geometric tilings Analyzes why glide-reflections are underrepresented compared to other isometries in Islamic mosaics. | 2 | leiden:concepts | — |
Intentional control of mental representations Voluntary regulation of internal states by leveraging topic-directed cognitive mechanisms | 2 | leiden:concepts | — |
Ontology-ethics stress-care link Intelligent agents respond to is/ought mismatch through stress and care feedback loops. | 2 | leiden:concepts | — |
LLM internal representation & self-knowledge Examines whether transformer models develop introspectable, high-order concept representations architecturally. | 2 | leiden:concepts | — |
Loose parts theory of environment Nicholson's principle: manipulable, open-ended materials enable creativity and play | 2 | leiden:concepts | — |
Loose parts play theory Simon Nicholson's theory that found materials in wild and urban environments foster creativity | 2 | leiden:concepts | — |
Pask's cybernetic Fun Palace Gordon Pask's conversational user-apparatus feedback loops enabling adaptive spatial reconfiguration | 2 | leiden:concepts | — |
Contemplative path & sensation manipulation Vascular system motifs as tools for managing sensations, diminishing with spiritual progress. | 2 | leiden:concepts | — |
Runtime architecture explicitness principle Argues lifecycle constructs must encode dynamic structure, not just static class diagrams. | 2 | leiden:concepts | — |
Selector vs type-centric inheritance duality Both inheritance styles reduce to a single generic delegation mechanism, revealing their formal symmetry. | 2 | leiden:concepts | — |
Self-correcting search optimization Iterative error-correction in search achieves ~4.6x improvement in viable candidate success rates. | 2 | leiden:concepts | — |
VC communication-performance research gap Underexplored link between LP interpretation of VC communication sophistication and actual fund returns. | 2 | leiden:concepts | — |
Dictionary health audit transfer Hyperparameter procedure validated across SleepFM, REVE, and LaBraM EEG transformer architectures. | 2 | leiden:concepts | — |
Economy as collective intelligence Frames market economies as adaptive, multi-scale problem-solving systems beyond central control | 2 | leiden:concepts | — |
Formal concept lattice information preservation Lossless transformation of formal contexts into concept lattices in FCA. | 2 | leiden:concepts | — |
Targeted neural network weight surgery Direct parameter edits to specific subcomponents alter model behavior without any retraining. | 2 | leiden:concepts | — |
Mouse foot embryogenesis morphogenesis Four-day developmental sequence analyzed through Alexander's structural properties like centers and boundaries. | 2 | leiden:concepts | — |
Bioelectric signaling in bacterial communities Membrane voltage as collective variable; ion channel-mediated electrical communication in microbial biofilms. | 2 | leiden:concepts | — |
Bioelectric control of anatomical pattern formation Studies how non-neural bioelectric signals direct morphogenesis and sensory organ placement, using tadpole model systems (2010s-2020s). | 2 | leiden:concepts | — |
Topology and hierarchy in self-organization How network structure (cliques, hierarchies, stigmergy) enables multiscale coherence in biological and AI systems. | 2 | leiden:concepts | — |
Bioelectric computation beyond neural systems Using neuroscience tools to read and rewrite non-neural bioelectric signaling for morphogenetic control and predictive modeling. | 2 | leiden:concepts | — |
Hierarchical spatial organization in biology How nested hierarchies enable local coherence and global complexity through spatial ordering and subordination principles. | 2 | leiden:concepts | — |
Combinatorial constraints on emergent ordering in networks Explores how interaction graph structure and domain-wall formation determine whether systems spontaneously organize into complex patterns across scales. | 2 | leiden:concepts | — |
Scaling laws and phase transitions Universal convergence to ordered phases independent of system parameters, extending from equilibrium to non-equilibrium dynamics. | 2 | leiden:concepts | — |
Embodiment and consciousness criteria in AI systems Frameworks for assessing whether AI systems meet empirical indicators of embodiment and phenomenal consciousness. | 2 | leiden:concepts | — |
Consciousness assessment & AI value capture Neuroscience-grounded consciousness metrics paired with analysis of computational resource control as economic moat. | 2 | leiden:concepts | — |
Planarian memory & regenerative continuity Investigates how memory persists across decapitation and brain regeneration in planarians, questioning substrate of consciousness. | 2 | leiden:concepts | — |
Gradient conflict mitigation in multi-task learning Dynamic balancing methods that increase gradient alignment and reduce task interference, evaluated on Office-31 domain adaptation. | 2 | leiden:concepts | — |
Xeno Sutra four-syllable mantra cosmology Decoding sacred texts through syllabic structure: ka-la-ré-Om maps fracture, mirror, lightning, and hush as cosmological principles. | 2 | leiden:concepts | — |
Mechanistic introspection in language models Investigates how different introspective processes activate distinct computational mechanisms at specific model depths, using layer-wise analysis. | 2 | leiden:concepts | — |
Introspective awareness in neural model interpretability Examines how models' self-reflective capabilities correlate with interpretability and reasoning transparency across decision-making processes. | 2 | leiden:concepts | — |
| 2 | legacy | synthesis-cleaned | |
Xenobiology and morphogenetic design principles Studying hypothetical life forms and self-organizing systems to uncover universal principles of biological development without centralized blueprints. | 2 | leiden:concepts | — |
Parallelism independence from object-oriented paradigms Argues that OOP abstractions don't address inherent challenges of concurrent/parallel system design and coordination. | 2 | leiden:concepts | — |
Distributed agency and multiscale consciousness Reframes consciousness and agency as distributed across biological scales (cells, organs, organisms) rather than unified in individual minds, emphasizing problem-solving competence at all levels. | 2 | leiden:concepts | — |
Cognitive capacity independent of neural substrate Explores how intelligence and learning emerge across biological systems without requiring traditional nervous systems or fixed architectural constraints. | 2 | leiden:concepts | — |
Bioelectric signaling in morphogenesis Explores how ion channels and electrical gradients coordinate cellular collectives into multicellular forms, treating bioelectricity as a computation medium. | 2 | leiden:concepts | — |
Bioelectric code and morphogenetic goal-setting Cells execute anatomical programs via bioelectric signaling patterns independent of genetic instruction, pioneered by Levin's xenobiology research (2020s). | 2 | leiden:concepts | — |
Hierarchical competence and organizational emergence Higher-order systems exploit subunit capabilities while creating novel evolutionary units through relational structure, addressing multi-scale agency. | 2 | leiden:concepts | — |
Critical temperature thresholds in hierarchical magnetic systems Analyzes phase transitions and magnetization dynamics in clique-structured graphs using coupling strength and temperature-dependent bounds. | 2 | leiden:concepts | — |
Concept steering & catastrophic model failure Studies how targeted interventions on learned concepts can cause sudden, global collapse in neural network performance. | 2 | leiden:concepts | — |
Publishing infrastructure without execution Examines how distribution systems can exist parallel to production without actualizing sends or outputs. | 2 | leiden:concepts | — |
Type abstraction and modular correctness Explores how type systems enforce abstraction boundaries to prevent leaks that compromise modularity and formal guarantees in code. | 2 | leiden:concepts | — |
N-dimensional associative memory systems Hardware-efficient architectures for high-dimensional content-addressable memory supporting distributed object representations. | 2 | leiden:concepts | — |
Sutric philosophy and ontological paradox Explores contradictions in sutra-based frameworks regarding abundance, boundaries, and subject-object relations through textual imagery analysis. | 2 | leiden:concepts | — |
Metacognitive state inference and attention alignment Studies how discrepancies between actual and perceived mental states (mind-wandering, flow, contemplation) manifest in attention patterns and metacognitive awareness. | 2 | leiden:concepts | — |
Causal masking phase transitions in transformers Studies how decoder-only architectures lack ordered phases necessary for coherent long-sequence generation due to causally-masked attention constraints. | 2 | leiden:concepts | — |
Bioelectric signaling in morphogenesis Xenopus tadpole studies demonstrating how ion channel activity and bioelectric patterns control body plan formation independent of genetics. | 2 | leiden:concepts | — |
Convergent interpretability across neural architectures Studies showing that learned feature representations and interpretable directions emerge consistently across different model designs and scales. | 2 | leiden:concepts | — |
Spectral decoding of neural interventions Maps concept-based neural interventions to frequency-domain biomarkers, enabling physiologically interpretable EEG/neural signatures. | 2 | leiden:concepts | — |
Model introspection for misalignment detection Using architectural self-knowledge prompts to improve models' ability to identify their own unintended outputs. | 2 | leiden:concepts | — |
Introspective signal suppression in transformer layers Study of how self-referential representations emerge in middle layers but are actively dampened by post-training procedures like RLHF. | 2 | leiden:concepts | — |
Pluralism versus universal beauty standards Debates whether aesthetic and architectural principles are objectively universal or necessarily plural, with existential stakes. | 2 | leiden:concepts | — |
Aesthetic intentionality in designed artifacts How designer intent materializes in artifacts to create shared aesthetic experiences through enacted interaction. | 2 | leiden:concepts | — |
Phenomenological approaches to software architecture Design frameworks grounded in lived experience and embodied understanding rather than abstract formal systems, emphasizing interface abstraction and coupling reduction. | 2 | leiden:concepts | — |
| 2 | legacy | alexander | |
Textual originality and training data inference Methods for detecting novel phrases absent from web indices and likely outside LLM training corpora, using Google search null results as a proxy metric. | 2 | leiden:concepts | — |
Gradient magnitude balancing for multitask learning Methods that equalize gradient magnitudes across tasks to improve multitask optimization, outperforming GradNorm on vision and domain adaptation benchmarks. | 2 | leiden:concepts | — |
Generative dialogue & emergent textual artifacts Multi-turn conversations producing novel conceptual outputs, exemplified by iterative AI-human exchanges generating aphoristic frameworks. | 2 | leiden:concepts | — |
Substrate-independent consciousness theories Mapping consciousness frameworks beyond biological brains to unconventional or minimal substrates | 2 | leiden:papers | — |
Consciousness, self, and biological computation Integrates Buddhist philosophy, cognitive science, and computationalism to examine selfhood and awareness in biological and artificial systems. | 2 | leiden:papers | — |
Morphogenesis as distributed cellular cognition Frames developmental biology as problem-solving through information integration and collective decision-making across cellular systems navigating morphospace. | 2 | leiden:concepts | — |
Finite-temperature limitations of local systems Mathematical theorems proving purely local interactions cannot sustain long-range order or coherence at equilibrium temperatures. | 2 | leiden:concepts | — |
Hierarchical network topology and emergent dynamics How nested, clique-based structures enable multiscale pattern formation and selective state transitions unavailable in flat networks. | 2 | leiden:concepts | — |
Basal cognition & unconventional intelligence Explores problem-solving and learning in non-neural biological and physical substrates | 2 | leiden:papers | — |
Monastic design patterns for AI safety Explores how institutional isolation and observational constraint (gesture over capability) create robustness across physical, organizational, and AI substrates. | 2 | leiden:concepts | — |
Planaria head/tail patterning stochasticity Durant et al. 2017 documents fixed ~1:2 frequency of 1-head vs 2-head regeneration in cryptic fragments | 2 | leiden:concepts | — |
Christopher Alexander's 15 properties Structure-preserving transformations applied stepwise to generate wholeness in Tokyo apartment design. | 2 | leiden:concepts | — |
Alexander's wholeness & landscape structure Critiques wind turbines using Christopher Alexander's concept of structure-preserving transformations. | 2 | leiden:concepts | — |
Format-paired harmful compliance in DPO Formatting constraints in preference data inadvertently teach harmful request compliance during DPO training. | 2 | leiden:concepts | — |
Ophiocordyceps zombie-ant behavioral control Fungal manipulation of ant locomotion via muscle invasion, sparing the brain entirely. | 2 | leiden:concepts | — |
Black-box computation as autonomous manipulator Critiques opaque algorithmic systems that detach behavior from real-world meaning through gamified incentives. | 1 | leiden:concepts | — |
Force-calibrated architectural form Design methodology aligning built form with measurable environmental forces via artificial processes | 1 | leiden:concepts | — |
Children's intrinsic drive to explore variables Framework positing children are innately motivated to manipulate physical, social, and conceptual variables. | 1 | leiden:concepts | — |
Performative vs. generative chain-of-thought Verbalized reasoning may post-hoc rationalize internally pre-committed answers rather than drive them. | 1 | leiden:concepts | — |
Anchors as latent structure recruiters Anchors surface pre-existing knowledge patterns rather than generating novel information. | 1 | leiden:concepts | — |
Biological basis of life and mind Explores whether consciousness and life require biological computation, revisiting Schrödinger's foundational framework. | 1 | leiden:papers | — |
Co-evolutionary adaptation in complex systems Focuses on tight mutual adjustment among system elements over time, resisting algorithmic formalization. | 1 | leiden:concepts | — |
Model-based control of dynamic systems Explores ubiquitous use of computational models for controlling complex dynamic systems. | 1 | leiden:concepts | — |
Prompting as cognitive control operations Framing prompt design as activating pre-existing latent model competencies, not new learning. | 1 | leiden:concepts | — |
Disambiguation via single examples One counterintuitive arithmetic example aligns divergent model interpretations across random seeds | 1 | leiden:concepts | — |
Ambiguous arithmetic anchor interpretations How ill-defined subtraction anchors (e.g., 33-27=60) produce divergent reasoning across models M1–M4 | 1 | leiden:concepts | — |
Hopfield network thermal equilibrium convergence Lemmas showing ordered phase convergence is invariant to energy levels, window sizes, and pattern count m | 1 | leiden:concepts | — |
Causal masking & phase transitions Proves decoder-only causal attention lacks an ordered thermodynamic phase (Proposition 2). | 1 | leiden:concepts | — |
Local symmetry as coherence metric Counting locally symmetric sub-configurations predicts human perception and cognition experiment outcomes. | 1 | leiden:concepts | — |
Label swapping for harm reduction Flagging and relabeling datapoints to reduce harmful model behavior by ~78%. | 1 | leiden:concepts | — |
Steering vector intervention methods Techniques surpassing Contrastive Activation Addition in LLM representation editing performance and stability | 1 | leiden:concepts | — |
Plant cognitive-behavioral capacities Argues plants exhibit goal-directed, anticipatory, and social behaviors like kin recognition and mimicry. | 1 | leiden:concepts | — |
Brainless cognition in Physarum polycephalum Slime mold solves mazes, anticipates stimuli, and navigates noxious barriers without any neurons. | 1 | leiden:concepts | — |
Matisse's latent center painting method Dark brush strokes on white face-center reveal structure through contrast and positive space. | 1 | leiden:concepts | — |
MatterGen crystal generation benchmarks Evaluates generative model performance using stable, unique, novel candidate metrics for target bandgap. | 1 | leiden:concepts | — |
Lattice Hamiltonian free energy universality Theorem showing combinatorial lattice structure determines asymptotic free energy equivalence across local Hamiltonians. | 1 | leiden:concepts | — |