Citation graph

Papers ranked by citation density (# ingested papers that cite them). Density ≥ 3 are auto-promoted as ingestion candidates by paper_discovery.py.

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Title
Status
9The computational boundary of a 'self': developmental bioelectricity drives multicellularity and scale-free cognition
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7Re-membering the body: applications of computational neuroscience to the top-down control of regeneration of limbs and other complex organs
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7Normalized shape and location of perturbed craniofacial structures in the Xenopus tadpole reveal an innate ability to achieve correct morphology
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7The biogenic approach to cognition
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7Top-down models in biology: explanation and control of complex living systems above the molecular level
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7On having no head: cognition throughout biological systems
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6Competency in navigating arbitrary spaces as an invariant for analyzing cognition in diverse embodiments
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6Technological Approach to Mind Everywhere: An Experimentally-Grounded Framework for Understanding Diverse Bodies and Minds
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6Cellular signaling pathways as plastic, proto-cognitive systems: Implications for biomedicine
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5Endless forms most beautiful 2.0: teleonomy and the bioengineering of chimaeric and synthetic organisms
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5Neural networks and physical systems with emergent collective computational abilities
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5Future medicine: from molecular pathways to the collective intelligence of the body
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5Behavior, Purpose and Teleology
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5Gene regulatory networks exhibit several kinds of memory: quantification of memory in biological and random transcriptional networks
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4Planarian regeneration as a model of anatomical homeostasis: Recent progress in biophysical and computational approaches
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4Collective cognition in animal groups
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4Long-Term, Stochastic Editing of Regenerative Anatomy via Targeting Endogenous Bioelectric Gradients
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4Bioelectric networks: the cognitive glue enabling evolutionary scaling from physiology to mind
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4The cognitive cell: bacterial behavior reconsidered
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4How can evolution learn?
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4Knowing one's place: a free-energy approach to pattern regulation
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4Learning in transcriptional network models: computational discovery of pathway-level memory and effective interventions
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4A new era for cyborg science is emerging: the promise of cyborganic beings
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4Notes on the Synthesis of Form
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4Anticipatory systems : philosophical, mathematical, and methodological foundations
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4Memory inception and preservation in slime moulds: the quest for a common mechanism
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4The Cognitive Lens: a primer on conceptual tools for analysing information processing in developmental and regenerative morphogenesis
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4Ion channels enable electrical communication in bacterial communities
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4Morphogenesis in robot swarms
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4Reframing cognition: getting down to biological basics
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4Collective intelligence: A unifying concept for integrating biology across scales and substrates
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4Morphological Coordination: A Common Ancestral Function Unifying Neural and Non-Neural Signaling
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4Quantifying causal emergence shows that macro can beat micro
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4Variational ecology and the physics of sentient systems
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4The bioelectric code: an ancient computational medium for dynamic control of growth and form
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3Uncertainty and stress: Why it causes diseases and how it is mastered by the brain
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3Evolutionary connectionism: algorithmic principles underlying the evolution of biological organisation in evo-devo, evo-eco and evolutionary transitions
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3Transmembrane voltage potential controls embryonic eye patterning in <i>Xenopus laevis</i>
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3Embodying probabilistic inference in biochemical circuits
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3From Bacteria to Bach and Back: The Evolution of Minds
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3The spirit of D'Arcy thompson dwells in empirical morphospace
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3Metabolic basis of brain-like electrical signalling in bacterial communities
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3Cardiac Memory: Do the Heart and the Brain Remember the Same?
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3Tumors as Organs: Complex Tissues that Interface with the Entire Organism
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3Information Theory and Statistical Mechanics
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3Collective minds
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3Use of genetically encoded, light-gated ion translocators to control tumorigenesis
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3‘Infotaxis’ as a strategy for searching without gradients
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3Integrated information theory: from consciousness to its physical substrate
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3Adaptive flight control with living neuronal networks on microelectrode arrays
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3Synthetic living machines: a new window on life
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3Transmembrane potential of GlyCl-expressing instructor cells induces a neoplastic-like conversion of melanocytes via a serotonergic pathway
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3Brainless but multi-headed: decision making by the acellular slime mould physarum polycephalum
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3Neurotransmitter signaling pathways required for normal development in Xenopus laevis embryos: a pharmacological survey screen
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3The bacterium as a model neuron
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3Cellular and evolutionary perspectives on organismal cognition: from unicellular to multicellular organisms
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3Collective behavior in cancer cell populations
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3The free-energy principle: a unified brain theory?
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3Resilient Machines Through Continuous Self-Modeling
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3Information-seeking, curiosity, and attention: computational and neural mechanisms
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3Cancer as a disorder of patterning information: computational and biophysical perspectives on the cancer problem
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3A scalable pipeline for designing reconfigurable organisms
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3Morphogenesis as Bayesian inference: A variational approach to pattern formation and control in complex biological systems
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3Coupling between distant biofilms and emergence of nutrient time-sharing
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3The rise of the biocyborg: synthetic biology, artificial chimerism and human enhancement
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3Darwin's agential materials: evolutionary implications of multiscale competency in developmental biology
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3Communication, Memory, and Development
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3Ectopic eyes outside the head in<i>Xenopus</i>tadpoles provide sensory data for light-mediated learning
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3Machine behaviour
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3Endogenous Bioelectric Signaling Networks: Exploiting Voltage Gradients for Control of Growth and Form
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3Scale‐Free Biology: Integrating Evolutionary and Developmental Thinking
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3Towards a Neuronal Gauge Theory
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3Living things are not (20th century) machines: updating mechanism metaphors in light of the modern science of machine behavior
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3Free Energy, Value, and Attractors
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3Homeostasis and soft robotics in the design of feeling machines
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3Chemotaxis: how bacteria use memory
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3The Cognitive Domain of a Glider in the Game of Life
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3Cognition in some surprising places
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3On Hebbian-like adaptation in heart muscle: a proposal for 'cardiac memory'
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3Perspective: the promise of multi-cellular engineered living systems
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3Life, death, and self: Fundamental questions of primitive cognition viewed through the lens of body plasticity and synthetic organisms
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3What nervous systems do: early evolution, input–output, and the skin brain thesis
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3Competitive and Coordinative Interactions between Body Parts Produce Adaptive Developmental Outcomes
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3Bioelectrical approaches to cancer as a problem of the scaling of the cellular self
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3Major evolutionary transitions in individuality
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3The stability of memories during brain remodeling: A perspective
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3Synthetic collective intelligence
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3Autopoiesis and Cognition
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3The scaling of goals from cellular to anatomical homeostasis: an evolutionary simulation, experiment and analysis
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3Long-range neural and gap junction protein-mediated cues control polarity during planarian regeneration
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3Allostasis: A Brain-Centered, Predictive Mode of Physiological Regulation
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3A linear-encoding model explains the variability of the target morphology in regeneration
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3Empowerment: A universal agent-centric measure of control
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3Probabilistic inference with polymerizing biochemical circuits
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3Can the macro beat the micro? Integrated information across spatiotemporal scales
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3Consciousness as Integrated Information: a Provisional Manifesto
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3Physiological inputs regulate species-specific anatomy during embryogenesis and regeneration
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3Computing machinery and intelligence
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3Maintenance of normal structure in heteroploid salamander larvae, through compensation of changes in cell size by adjustment of cell number and cell shape
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3The Markov blankets of life: autonomy, active inference and the free energy principle
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3Plant anesthesia supports similarities between animals and plants
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3Species-Independent Attraction to Biofilms through Electrical Signaling
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3Active inference and agency: optimal control without cost functions
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2Whatever next? Predictive brains, situated agents, and the future of cognitive science
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2Swarm robotics reviewed
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2Cyborg organoids: implantation of nanoelectronics via organogenesis for tissue-wide electrophysiology
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2The neurally controlled animat: biological brains acting with simulated bodies
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2The principles of psychology
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2The ubiquity of consciousness
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2Deep learning
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2Exploratory adaptation in large random networks
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2Cumulative culture can emerge from collective intelligence in animal groups
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2The road to modularity
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2Interoceptive predictions in the brain
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2Serotonergic stimulation induces nerve growth and promotes visual learning via posterior eye grafts in a vertebrate model of induced sensory plasticity
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2Memory formation in the absence of experience
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2Synthetic morphology with agential materials
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2The yeast galactose network as a quantitative model for cellular memory
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2Quorum decision-making facilitates information transfer in fish shoals
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2Heterotypic gap junction channels as voltage-sensitive valves for intercellular signaling
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2Animal cells connected by nanotubes can be electrically coupled through interposed gap-junction channels
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2Information socialtaxis and efficient collective behavior emerging in groups of information-seeking agents
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2Collective dynamics in entangled worm and robot blobs
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2Normal genetically mosaic mice produced from malignant teratocarcinoma cells.
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2Totipotency and normal differentiation of single teratocarcinoma cells cloned by injection into blastocysts.
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2Principles of the Self-Organizing Dynamic System
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2On the nature of causation in complex systems
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2Active inference and epistemic value
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2Understanding of anesthesia – Why consciousness is essential for life and not based on genes
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2Interrogating cellular perception and decision making with optogenetic tools
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2Cancer tumors as Metazoa 1.0: tapping genes of ancient ancestors
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2The Extended Mind
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2Amoeboid organism uses extracellular secretions to make smart foraging decisions
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2MEMORY: THE ANALOGY WITH FERROMAGNETIC HYSTERESIS
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2Cross-modal plasticity revealed by electrotactile stimulation of the tongue in the congenitally blind
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2Detecting agency from the biological motion of veridical<i>vs</i>animated agents
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2A theory of biological relativity: no privileged level of causation
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2The algorithmic origins of life
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2Bioelectric gene and reaction networks: computational modelling of genetic, biochemical and bioelectrical dynamics in pattern regulation
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2A variational approach to niche construction
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2Habituation in non-neural organisms: evidence from slime moulds
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2Coarse-graining as a downward causation mechanism
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2The chemical basis of morphogenesis
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2Beyond society: the evolution of organismality
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2Consciousness: here, there and everywhere?
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2An option space for early neural evolution
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2Liquid brains, solid brains
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2Uncovering cognitive similarities and differences, conservation and innovation
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2Amoebae Anticipate Periodic Events
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2Long-term bidirectional neuron interfaces for robotic control, and in vitro learning studies
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2Embodying Cultured Networks with a Robotic Drawing Arm
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2Information Value Theory
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2Information Processing and Dynamics in Minimally Cognitive Agents
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2The evolution of phenotypic correlations and "developmental memory"
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2The Self‐Evidencing Brain
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2Bioelectric signalling via potassium channels: a mechanism for craniofacial dysmorphogenesis in KCNJ2‐associated Andersen–Tawil Syndrome
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2Neuromorphic learning, working memory, and metaplasticity in nanowire networks
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2Programmable self-assembly in a thousand-robot swarm
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2Serotonergic regulation of melanocyte conversion: A bioelectrically regulated network for stochastic all-or-none hyperpigmentation
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2BRAINPORT: AN ALTERNATIVE INPUT TO THE BRAIN
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2Ion Channels in Development and Cancer
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2Perceptual Neural Organization: Some Approaches Based on Network Models and Information Theory
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2Of Minds and Embryos: Left-Right Asymmetry and the Serotonergic Controls of Pre-Neural Morphogenesis
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2Connecting Brains to Robots: An Artificial Body for Studying the Computational Properties of Neural Tissues
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2Characterizing Autopoiesis in the Game of Life
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2The Helmholtz Machine
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2Active Inference, Evidence Accumulation, and the Urn Task
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2Linear algebraic structure of word senses, with applications to polysemy
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2Of what is 'minimal cognition' the half-baked version?
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2Long-term potentiation in bone – a role for glutamate in strain-induced cellular memory?
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2What can ecosystems learn? Expanding evolutionary ecology with learning theory
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2A principle of organization which facilitates broad Lamarckian-like adaptations by improvisation
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2General Anesthetics Inhibit Gap Junction Communication in Cultured Organotypic Hippocampal Slices
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2On Information and Sufficiency
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2HCN4 ion channel function is required for early events that regulate anatomical left-right patterning in a Nodal- and Lefty asymmetric gene expression-independent manner
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2Light-activation of the Archaerhodopsin H+-pump reverses age-dependent loss of vertebrate regeneration: sparking system-level controls <i>in vivo</i>
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2Adaptive correction of craniofacial defects in pre-metamorphic <i>Xenopus laevis</i> tadpoles involves thyroid hormone-independent tissue remodeling
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2Transmembrane voltage potential is an essential cellular parameter for the detection and control of tumor development in a<i>Xenopus</i>model
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2Evolution of Associative Learning in Chemical Networks
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2How evolution learns to generalise: Using the principles of learning theory to understand the evolution of developmental organisation
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2Memory functions reveal structural properties of gene regulatory networks
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2Learning Theories Reveal Loss of Pancreatic Electrical Connectivity in Diabetes as an Adaptive Response
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2The Müller-Lyer Illusion in Ant Foraging
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2Optogenetics in Developmental Biology: using light to control ion flux-dependent signals in Xenopus embryos
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2Local and long-range endogenous resting potential gradients antagonistically regulate apoptosis and proliferation in the embryonic CNS
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2The Multiple Realizability of Sentience in Living Systems and Beyond
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2Endogenous Gradients of Resting Potential Instructively Pattern Embryonic Neural Tissue via Notch Signaling and Regulation of Proliferation
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2Induction of Vertebrate Regeneration by a Transient Sodium Current
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2Transmembrane voltage potential of somatic cells controls oncogene-mediated tumorigenesis at long-range
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2Neural natural language inference models partially embed theories of lexical entailment and negation
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2Under the hood: Using diagnostic classifiers to investigate and improve how language models track agreement information
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2The Wisdom of the Body: Future Techniques and Approaches to Morphogenetic Fields in Regenerative Medicine, Developmental Biology and Cancer
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2The Major Transitions of Evolution.
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2Thread: Circuits
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2A formal model of interpersonal inference
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2Tunneling Nanotubes and Gap Junctions–Their Role in Long-Range Intercellular Communication during Development, Health, and Disease Conditions
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2Exploration, novelty, surprise, and free energy minimization
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2The Transition to Minimal Consciousness through the Evolution of Associative Learning
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2MEART: The semi-living artist
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2What is intrinsic motivation? A typology of computational approaches
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