Bridges
same_concept_as edges from external markdown corpora into corpus.entities. Built by cross_corpus_bridges.py via Nomic cosine over file-signatures (title + first paragraph) and the live corpus. Shown here: top connections at cosine ≥ 0.83.
aboutblank_kb
5,838
max 0.933 · avg 0.816
alexander
553
max 0.929 · avg 0.786
research_notes
40
max 0.841 · avg 0.786
zen
6
max 0.768 · avg 0.758
Top bridges
- aboutblank_kbCan anatomical goal states be inferred from observation of stress states?
questions/can-anatomical-goal-states-be-inferred-from-observation.md- findingAnatomical goal states could not be inferred from observation of stress states, revealing limits of external observer knowledge0.933
- claimAnatomical goal states cannot be inferred from observation of stress states by an external observer.0.930
- questionCan external observers infer the anatomical goal state of a developing system by observing stress patterns?0.890
- aboutblank_kbWhat are the features of morphogenesis that enable evolution to search difficult phenotype space efficiently despite pleiotropy, degeneracy, and redundancy?
questions/what-are-the-features-of-morphogenesis-that-enable.md - aboutblank_kbCan tissues be trained via reinforcement learning to produce specific morphological outcomes?
questions/can-tissues-be-trained-via-reinforcement-learning-to.md - alexander2024 07 12 Hibai Unzueta Simon Nicholsons Theory Of Loose Parts v2.0.pdf 7cc4f0
papers/extracted/2024-07-12_Hibai-Unzueta_Simon-Nicholsons-Theory-Of-Loose-Parts-v2.0.pdf_7cc4f0.md - aboutblank_kbHow do bioelectric networks scale cell computation into anatomical homeostasis and regulate morphogenesis?
questions/how-do-bioelectric-networks-scale-cell-computation-into.md - aboutblank_kbHow does evolution capitalize on the laws of physics and computation to generalize so well from specific examples to highly diverse possible instantiations?
questions/how-does-evolution-capitalize-on-the-laws-of.md - aboutblank_kbWhat is the relationship between the genome and anatomy, and what mechanisms allow biology to exhibit robustness and plasticity simultaneously?
questions/what-is-the-relationship-between-the-genome-and.md - aboutblank_kbCan bioelectric reprogramming offer therapeutic approaches to cancer?
questions/can-bioelectric-reprogramming-offer-therapeutic-approaches-to-cancer.md - aboutblank_kbStress-Care Intelligence Loop
frameworks/stress-care-intelligence-loop.md - aboutblank_kbIs developing principled frameworks for recognizing sentience in diverse intelligences an existential requirement for humanity?
questions/is-developing-principled-frameworks-for-recognizing-sentience-in.md - aboutblank_kbHow does stress sharing as a conserved signal mechanism enable functional cooperation of cells?
questions/how-does-stress-sharing-as-a-conserved-signal.md - aboutblank_kbCan awareness of the illusion of self augment an agent's affordances?
questions/can-awareness-of-the-illusion-of-self-augment.md - aboutblank_kbCan tissue morphogenesis be trained using reinforcement learning with rewards and punishments rather than direct genetic/molecular manipulation?
questions/can-tissue-morphogenesis-be-trained-using-reinforcement-learning.md- claimMorphogenesis could be trainable via reinforcement learning, enabling a new path to anatomical control in regenerative medicine.0.917
- questionCan Tissue Morphogenesis Be Trained Using Reinforcement Learning0.902
- claimMorphogenetic tissues can be trained via reinforcement learning for specific anatomical outcomes, bypassing the complexity of genomic editing.0.901
- aboutblank_kbCan being aware of the illusion of self augment an agent's affordances?
questions/can-being-aware-of-the-illusion-of-self.md - aboutblank_kbCan bioelectric computation provide basis for understanding cognition across non-neural biological systems?
questions/can-bioelectric-computation-provide-basis-for-understanding-cognition.md - alexanderSimon Nicholson’s Theory Of Loose Parts
papers/extracted/2024-07-12_Hibai-Unzueta_Simon-Nicholsons-Theory-Of-Loose-Parts-v2.0.p.md - aboutblank_kbCan Gene Regulatory Networks be trained and modified through associative learning approaches?
questions/can-gene-regulatory-networks-be-trained-and-modified.md - aboutblank_kbTAME Framework
frameworks/tame-framework.md - aboutblank_kbIs bioelectric coordination a general computational medium underlying different types of biological intelligence?
questions/is-bioelectric-coordination-a-general-computational-medium-underlying.md - aboutblank_kbCan ecosystems and learning systems evolve collective intelligence?
questions/can-ecosystems-and-learning-systems-evolve-collective-intelligence.md - aboutblank_kbWhat is the relationship or overlap between the sets demarcated by 'life' and 'cognition'?
questions/what-is-the-relationship-or-overlap-between-the.md - aboutblank_kbCare
concepts/interdisciplinary/care.md - aboutblank_kbWhere do the anatomical and behavioral goals of xenobots originate if they were not directly selected for over aeons?
questions/where-do-the-anatomical-and-behavioral-goals-of.md - aboutblank_kbCan bioelectric manipulation enable predictive control over morphogenesis without genetic changes?
questions/can-bioelectric-manipulation-enable-predictive-control-over-morphogenesis.md - aboutblank_kbMorphogenesis
concepts/biology/morphogenesis.md - aboutblank_kbCan morphogenetic systems be trained via reinforcement learning for specific morphological outcomes?
questions/can-morphogenetic-systems-be-trained-via-reinforcement-learning.md- questionCan Morphogenetic Systems Be Trained Via Reinforcement Learning0.902
- claimMorphogenetic tissues can be trained via reinforcement learning for specific anatomical outcomes, bypassing the complexity of genomic editing.0.898
- hypothesisMorphogenesis is trainable via reinforcement learning for specific morphological outcomes.0.895
- claimMorphogenesis could be trainable via reinforcement learning, enabling a new path to anatomical control in regenerative medicine.0.893
- hypothesisIf cellular collectives are learning agents, then reinforcement learning protocols should be able to train tissues to produce specific morphologies.0.892
- aboutblank_kbHow should we gauge moral responsibility and establish our moral obligations toward novel bioengineered beings and artificial intelligences?
questions/how-should-we-gauge-moral-responsibility-and-establish.md - aboutblank_kbWhat are the invariants that enable a Self to persist and be recognizable despite drastic biological remodeling?
questions/what-are-the-invariants-that-enable-a-self.md - aboutblank_kbWhat mechanisms enable major evolutionary transitions in individuality?
questions/what-mechanisms-enable-major-evolutionary-transitions-in-individuality.md - aboutblank_kbHow do bioengineered novel selves raise moral responsibility?
questions/how-do-bioengineered-novel-selves-raise-moral-responsibility.md - aboutblank_kbDoes the current Self cease to exist if an organism changes, and how can identity persist through transformation?
questions/does-the-current-self-cease-to-exist-if.md - aboutblank_kbTame (Technological Approach To Mind Everywhere)
frameworks/technological-approach-to-mind-everywhere.md - aboutblank_kbWhat is the coordination mechanism that enables cross-level information integration from human thoughts to cellular physiology?
questions/what-is-the-coordination-mechanism-that-enables-crosslevel.md - aboutblank_kbCan bioelectric circuit states represent counterfactual possibilities encoding multiple potential futures simultaneously?
questions/can-bioelectric-circuit-states-represent-counterfactual-possibilities-encoding.md - aboutblank_kbCan plants achieve sentience or felt states without nervous tissue and brain-like centralized processors?
questions/can-plants-achieve-sentience-or-felt-states-without.md - aboutblank_kbHow do the principles of connectionist learning and deep learning apply to evolutionary system-level adaptation?
questions/how-do-the-principles-of-connectionist-learning-and.md - aboutblank_kbWhat principles govern how diverse living systems (synthetic, hybrid, natural) can interoperate?
questions/what-principles-govern-how-diverse-living-systems-synthetic.md - aboutblank_kbCan morphogenetic setpoints be rewritten without rewiring genomic specifications?
questions/can-morphogenetic-setpoints-be-rewritten-without-rewiring-genomic.md - aboutblank_kbHow can evolution explore and navigate the highly rugged search space created by pleiotropy, degeneracy, and redundancy in morphogenesis?
questions/how-can-evolution-explore-and-navigate-the-highly.md - aboutblank_kbHow do we gauge moral responsibility and establish moral obligations toward novel sentient beings created through bioengineering without familiar touchstones?
questions/how-do-we-gauge-moral-responsibility-and-establish.md - aboutblank_kbHow can evolution navigate the rugged search space of morphogenesis given its complexity, pleiotropy, degeneracy, and redundancy?
questions/how-can-evolution-navigate-the-rugged-search-space.md - alexanderKay 1984 Opening the Hood of a Word Processor
papers/extracted/Kay-1984-Opening-the-Hood-of-a-Word-Processor.md - aboutblank_kbHow does evolution search the space of behavior-shaping signals rather than low-level genetic implementations?
questions/how-does-evolution-search-the-space-of-behaviorshaping.md - aboutblank_kbHow might understanding collective intelligence improve regenerative medicine and cancer treatment?
questions/how-might-understanding-collective-intelligence-improve-regenerative-medicine.md - aboutblank_kbWhat mechanisms enable anatomical homeostasis and pattern regulation in biological systems?
questions/what-mechanisms-enable-anatomical-homeostasis-and-pattern-regulation.md - aboutblank_kbCan morphogenetic setpoints be rewritten without rewiring the genome (in wild-type genomes)?
questions/can-morphogenetic-setpoints-be-rewritten-without-rewiring-the.md - aboutblank_kbCan stress-induced mutations and responses drive evolutionary innovation and origin of novel traits?
questions/can-stressinduced-mutations-and-responses-drive-evolutionary-innovation.md - aboutblank_kbHow is consciousness related to downward causation?
questions/how-is-consciousness-related-to-downward-causation.md- questionHow Is Consciousness Related To Downward Causation0.893
- aboutblank_kbWhat role do bioelectric patterns play in morphogenesis and regeneration?
questions/what-role-do-bioelectric-patterns-play-in-morphogenesis.md - aboutblank_kbCan consciousness be attributed to systems beyond brains and neurons?
questions/can-consciousness-be-attributed-to-systems-beyond-brains.md - aboutblank_kbBioelectric Prepattern
concepts/biology/bioelectric-prepattern.md - aboutblank_kbHow can bottom-up selection on lower-level units produce higher-level collective adaptation?
questions/how-can-bottomup-selection-on-lowerlevel-units-produce.md- claimBefore a transition, the higher-level unit of selection does not exist, yet complex adaptations creating that unit must evolve through bottom-up selection on lower-level units.0.892
- claimEvolutionary transitions must be explained by bottom-up selection on existing lower-level units without presupposing higher-level unit0.890
- aboutblank_kbWhat principles of coordination apply universally across chemical, biological, and artificial systems?
questions/what-principles-of-coordination-apply-universally-across-chemical.md - aboutblank_kbIs consciousness distributed across biological scales rather than localized to brains?
questions/is-consciousness-distributed-across-biological-scales-rather-than.md - aboutblank_kbHow does developmental bioelectricity enable multicellular coordination and individuation?
questions/how-does-developmental-bioelectricity-enable-multicellular-coordination-and.md - aboutblank_kbActive Inference
frameworks/active-inference.md- paperActive Inference: A Process Theory0.890
- aboutblank_kbWhat mechanisms allow the coordination of cell activity toward one consistent morphology across multicellular collectives?
questions/what-mechanisms-allow-the-coordination-of-cell-activity.md - aboutblank_kbHow do multiple short-sighted, self-interested entities organize their relationships with one another to create a new level of individuality such that they act consistently with long-term collective interest?
questions/how-do-multiple-shortsighted-selfinterested-entities-organize-their.md - aboutblank_kbPersistence Paradox
concepts/philosophy/persistence-paradox.md - aboutblank_kbCan cognition and learning occur without neural tissue?
questions/can-cognition-and-learning-occur-without-neural-tissue.md - aboutblank_kbHow can we gauge moral responsibility and our moral obligations toward novel bioengineered creatures without familiar touchstones of standard evolved forms?
questions/how-can-we-gauge-moral-responsibility-and-our.md - aboutblank_kbAnatomical Homeostasis
concepts/biology/anatomical-homeostasis.md - aboutblank_kbCan bioelectric pattern memory be safely and ethically modified for therapeutic purposes?
questions/can-bioelectric-pattern-memory-be-safely-and-ethically.md